Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0830.Seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   2.6  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    27   3.4  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.9  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   7.8  

>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 525 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 668
           P FTI++K +NF ++N   ERN   ++L   +  ++  + ++   I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +1

Query: 442 EEKRQRLEEAEKKRQAMLQA 501
           EEKR+++EE++K  + +LQA
Sbjct: 138 EEKRRKIEESDKWHRVLLQA 157


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 104 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVES 3
           CW  I    G S  L+  AL+L PA+    NV S
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLS 325


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 448 KRQRLEEAEKKRQAMLQAMKV---PARPDPTSPSKRRAKTS 561
           KR+   E +KK  +M + +KV   P + D  SP K++  TS
Sbjct: 5   KRKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTS 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,779
Number of Sequences: 5004
Number of extensions: 25187
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)