Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0830.Seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0357 + 18075171-18077240                                         31   0.86 
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859...    29   3.5  
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344...    29   4.6  
11_06_0722 - 26678873-26680843                                         28   6.1  
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422...    28   8.0  
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713...    28   8.0  
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528...    28   8.0  

>02_03_0357 + 18075171-18077240
          Length = 689

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
 Frame = +3

Query: 486 GYAPGHESASKTGPN---FTIQKKSENFGLSNAQLERNKT-----KEQLEEEKKISLSIR 641
           G   G  S S +G +    +I++K +NF L+  ++ RN+T       QL EE KIS+S  
Sbjct: 575 GSGSGSSSGSGSGHSSSRMSIKEKFKNFNLAFEEIYRNQTTWKVPDPQLREELKISISEN 634

Query: 642 IKP 650
           + P
Sbjct: 635 VIP 637


>07_03_0316 +
           16684100-16684339,16684425-16685132,16685241-16685939,
           16685992-16686053,16686096-16686368,16686622-16686873,
           16686954-16687064,16687152-16687212,16687312-16687404,
           16687482-16687667
          Length = 894

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 179 PKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKR 325
           P +EGE  P   KRQ +K+    +    T+T G+N   R   S+ A KR
Sbjct: 76  PPKEGETAPRQSKRQPKKKVPSKDDEAPTNTTGSNKSER---SAKAKKR 121


>01_01_0467 -
           3446243-3446254,3446331-3446420,3446544-3446816,
           3446898-3447066,3447579-3447646,3447890-3448074,
           3448683-3448806
          Length = 306

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 167 TKPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNA 316
           TK AP +  E  P+  + ++ +   L     +T+ NG N+G    + S+A
Sbjct: 257 TKEAPPKPTEASPQLNQVKESESDPLISDSLSTAENGGNAGDDEALKSSA 306


>11_06_0722 - 26678873-26680843
          Length = 656

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 588 NKTKEQLEEEKKISLSIRIKPLTIEGLSVDK 680
           NKTK+  +E+K++ LS+ +K   IE L  ++
Sbjct: 418 NKTKKGRKEDKRVRLSMDVKKTVIETLKKNR 448


>09_06_0200 +
           21539963-21541271,21541912-21542013,21542095-21542291,
           21542396-21542603,21542685-21542922,21543010-21543160,
           21543538-21543849
          Length = 838

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 660 RWSAA*CGWTGRSSSPLPAAPWSCCAPAGHC 568
           RWS+    W      P    P+  C P G+C
Sbjct: 272 RWSSGSSAWVVLQEWPAGCDPYDFCGPNGYC 302


>08_02_0545 +
           18470313-18470669,18470901-18471095,18471183-18471362,
           18471462-18471656,18472081-18472179,18472271-18472780,
           18472896-18473225
          Length = 621

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 436 DIEEKRQRLEEAEKKRQAMLQAMKVPARPDPTSPSKRRAK 555
           +IE+ +  LE   KK+QA  QAMK  AR +  +  K + K
Sbjct: 477 EIEKNKLALER--KKKQAEKQAMKAAARAEKEAEKKLKEK 514


>04_03_1031 +
           21850857-21851009,21852229-21852350,21852447-21852891,
           21852981-21853087,21853192-21854524,21854632-21854859,
           21854951-21855181,21855278-21855537,21855651-21856113
          Length = 1113

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 442 EEKRQRLEEAEKKRQAMLQAMKVPARPDPTSPS 540
           EE   +L+EAE +RQ   + +   AR  P SPS
Sbjct: 37  EEIEAKLKEAELRRQQFHEWVSCKARKKPRSPS 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,291,003
Number of Sequences: 37544
Number of extensions: 198498
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)