Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0830.Seq
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_40386| Best HMM Match : BAR (HMM E-Value=0) 30 2.0
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 30 2.0
SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_15732| Best HMM Match : DltD_N (HMM E-Value=8.6) 29 4.7
SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 4.7
SB_40359| Best HMM Match : PSCyt3 (HMM E-Value=9.6) 29 4.7
SB_19128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 28 6.2
SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 8.2
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 439 IEEKRQRLEEAEKKRQAMLQAMK 507
+EE+R+RLE EK+RQA QAM+
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQ 341
>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
Length = 369
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 176 APKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMS-SNALKRS 328
APKQ E +PE + Q +K + DE+ N T+ + P + S S+ LK S
Sbjct: 256 APKQAPE-EPENVPEQHEKAPESDEEQGNGETSAKGTNPLAKSSDSDKLKPS 306
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 442 EEKRQRLEEAEKKRQAMLQAMKVPARPDPTSPSKRR 549
EE+RQ+ EEA K+R+ L A K P +S +RR
Sbjct: 537 EERRQKREEARKRREEKL-AKKGPTTSTSSSRKRRR 571
>SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 669 RDPRWSAA*CGWTGRSSSPLPAAPWSCCAPAGHC 568
RD A CG TG+ S P +CCA A C
Sbjct: 181 RDAAIVAKGCGCTGQYSQTCTQGPGACCATAESC 214
>SB_15732| Best HMM Match : DltD_N (HMM E-Value=8.6)
Length = 121
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 484 QAMLQAMKVPARPDPTSPSKRRAKTS 561
Q L++M+ P+ P TSP+KRR S
Sbjct: 93 QTSLESMRAPSCPTTTSPAKRRRTPS 118
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +2
Query: 188 EGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 355
E E DP+ R RS+ + NT N AN+GP SSN P+ R P
Sbjct: 984 EIECDPDVAMRLATLRSEASFE--NTLNNQANAGPSEETSSNPKSYLVPAPRKAKP 1037
>SB_40359| Best HMM Match : PSCyt3 (HMM E-Value=9.6)
Length = 121
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 484 QAMLQAMKVPARPDPTSPSKRRAKTS 561
Q L++M+ P+ P TSP+KRR S
Sbjct: 93 QTTLESMRAPSCPTTTSPAKRRRTPS 118
>SB_19128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 484 QAMLQAMKVPARPDPTSPSKRRAKTS 561
Q L++M+ P+ P TSP+KRR S
Sbjct: 93 QTSLESMRAPSCPTTTSPAKRRRTPS 118
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 209 FIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSA 340
F KRQ QK S L + + G + G R S + K+ RP +
Sbjct: 2535 FEKRQLQKPSSLQQSKKKDDPAGGSHGKNRSTSFSGEKKKRPKS 2578
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 167 TKPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTN 274
T+P PKQ G + + +D KR+D + +NT N
Sbjct: 937 TEPGPKQIGPDESSLNRERDTKRADCQQ--KNTPAN 970
>SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +1
Query: 439 IEEKRQRLEEAEKKRQAMLQAMKVPARPDPTSPSKR 546
+E+ ++++EE +K+++A+L K D +PS++
Sbjct: 160 LEDAKKKIEELQKEKEAILLRTKATRTRDRVTPSRQ 195
>SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 448 KRQRLEEAEKKRQAMLQAMKVPARPDPTSPSKRRA 552
K R+E A+K+ ++ A ++P P P+ P RA
Sbjct: 1376 KWNRIERAKKEALRVVAAQQLPVAPGPSEPQGLRA 1410
>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 337
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 373 RGAFLLRHEKPCAWPASL*GV 311
RGA L R+E PC W A L G+
Sbjct: 69 RGAALQRNEPPCMWIAILNGI 89
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 484 QAMLQAMKVPARPDPTSPSKRRAKTS 561
Q L++M+ P+ P TSP+KRR S
Sbjct: 839 QTSLESMRPPSCPTTTSPAKRRRTPS 864
>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 525 PNFTIQKKSENFGLSNAQLERNKTKEQLEEE 617
P T + EN GLSN L ++KTK E+
Sbjct: 498 PTPTSSQTQENIGLSNGTLTQDKTKPGCSED 528
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 179 PKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSAR 343
P+++ D R+D KRSD + R + +N+ PRR S+++ S R
Sbjct: 705 PRRDKRSDSNATPRRD-KRSDSNATLRRDKKSDSNATPRRDEKSDSITSSSHETR 758
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,232
Number of Sequences: 59808
Number of extensions: 216980
Number of successful extensions: 870
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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