Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0830.Seq
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical ...    32   0.34 
AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    32   0.44 
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    32   0.44 
U80439-2|AAB37639.1|  435|Caenorhabditis elegans Human cln (neur...    31   1.0  
AF326786-1|AAK38267.1|  435|Caenorhabditis elegans CLN-3.2 protein.    31   1.0  
Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    29   3.1  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      29   3.1  
U37429-11|AAA79352.1|  312|Caenorhabditis elegans Hypothetical p...    24   6.5  
Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical
           protein Y92H12A.4 protein.
          Length = 782

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 504 ESASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIE-GLSVDK 680
           E  S   P+F+ +K S +   +  ++E+ K K+ +EE+++  L++ IK L  E G  + K
Sbjct: 520 EQKSTEKPSFSTEKLSSD--SATTKIEKEKLKKAIEEQEEQELNVLIKQLQGEIGTKIAK 577

Query: 681 LR 686
           L+
Sbjct: 578 LK 579


>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
 Frame = +3

Query: 522 GPNFTIQKKSENFGLSN-------AQLERNKTKEQLEEEKKISLS 635
           G NF IQKK E+ G+ +       A+ E   TKEQ EE K ++++
Sbjct: 155 GRNFVIQKKEESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMA 199


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
 Frame = +3

Query: 522 GPNFTIQKKSENFGLSN-------AQLERNKTKEQLEEEKKISLS 635
           G NF IQKK E+ G+ +       A+ E   TKEQ EE K ++++
Sbjct: 155 GRNFVIQKKEESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMA 199


>U80439-2|AAB37639.1|  435|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.2
           protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +2

Query: 206 EFIKRQDQKRSDLDEQ*-----RNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 355
           +FI   D +R +++E+      R    N  +   RRR +S  L+R  P  +F++P
Sbjct: 224 DFIPADDMRREEVEEEEGLLGIREDRENSVDVTSRRRQTSTTLERVLPLLKFMIP 278


>AF326786-1|AAK38267.1|  435|Caenorhabditis elegans CLN-3.2 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +2

Query: 206 EFIKRQDQKRSDLDEQ*-----RNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 355
           +FI   D +R +++E+      R    N  +   RRR +S  L+R  P  +F++P
Sbjct: 224 DFIPADDMRREEVEEEEGLLGIREDRENSVDVTSRRRQTSTTLERVLPLLKFMIP 278


>Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical
           protein K10D3.3 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 442 EEKRQRLEEAEKKRQAMLQAM-KVPARPDPT 531
           E++R+RL E ++K  AM  A  ++PA P PT
Sbjct: 174 EQRRKRLREEKEKENAMRAASPEIPAGPPPT 204


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
           protein.
          Length = 1173

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 486 GYAPGHESASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIE- 662
           G+A G            +  K+  F L    + RN+ + ++ E +K SLS +I  L  E 
Sbjct: 431 GHASGVPEEKYEAVKMELDSKNREFELLKDSIARNEIRAKMIENEKNSLSTKISDLEREL 490

Query: 663 GLSVDKLR 686
             + DKLR
Sbjct: 491 KDNKDKLR 498


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 486 GYAPGHESASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIE- 662
           G+A G            +  K+  F L    + RN+ + ++ E +K SLS +I  L  E 
Sbjct: 431 GHASGVPEEKYEAVKMELDSKNREFELLKDSIARNEIRAKMIENEKNSLSTKISDLEREL 490

Query: 663 GLSVDKLR 686
             + DKLR
Sbjct: 491 KDNKDKLR 498


>U37429-11|AAA79352.1|  312|Caenorhabditis elegans Hypothetical
           protein F09E5.12 protein.
          Length = 312

 Score = 24.2 bits (50), Expect(2) = 6.5
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +2

Query: 170 KPAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPS 337
           +PAP Q    D E ++   +K  D  E     ++  +N+G    M S +     P+
Sbjct: 159 RPAPAQRENEDDEDVEIDVEKDDDEPEDPDGRNSVSSNAGSDNSMRSPSFSPPSPA 214



 Score = 22.2 bits (45), Expect(2) = 6.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 8   PHSNVAVLPVQEPVPS 55
           PH N+  +PV  P P+
Sbjct: 148 PHQNLQNMPVPRPAPA 163


>Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical
           protein ZC376.1 protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 501 HESASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIR 641
           H     +GP+ +I++  + F    + LE  K + +L+ EKKI + +R
Sbjct: 504 HLKGVASGPDKSIEQFEKVFNERESFLEELKLRRKLKLEKKIGVQMR 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,574,641
Number of Sequences: 27780
Number of extensions: 150961
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)