Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0830.Seq
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35890.1 68417.m05097 La domain-containing protein contains P...    32   0.31 
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    31   0.95 
At2g38370.1 68415.m04714 expressed protein                             28   6.7  

>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
           PF05383: La domain
          Length = 523

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +2

Query: 173 PAPKQEGEGDPEFIKRQDQKRSDLDEQ*RNTSTNGANSGPRRRMSSNALKRSRPSAR 343
           PAPKQ G  +P       ++RS       + S NG  S P  + S   L    PS R
Sbjct: 182 PAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSPR 238


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 483 PGYAPGHESASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 617
           PGYAP HE  + +G +F   K +    +S ++   +K+ E+L  E
Sbjct: 475 PGYAPTHEGDNSSGWSFPTSKGNIYISISASKPYLHKSHEELRWE 519


>At2g38370.1 68415.m04714 expressed protein 
          Length = 522

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 507 SASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIR 641
           S  K     T  +K ++FG +   +  NK  +  +++KKI+L++R
Sbjct: 478 SEGKENEKRTKTRKRKSFGFAKISVLLNKESKNKKKKKKIALNLR 522


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,148,534
Number of Sequences: 28952
Number of extensions: 143009
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)