Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0828.Seq
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    30   0.23 
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    29   0.53 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.53 
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    26   4.9  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    25   6.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   6.5  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.5  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 251 PDRRFFALWRWNPRSLIVDSCSK 183
           PD +FF ++ W+P  L + SC K
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFK 242


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 164 GLSVVP--VWNKSPLLKNVDSNAKGRKTVYQGVAHYVNNHPIQVFWGRGAVKH*IGTL 331
           G S+VP   + +S + + VD+N + R   +Q +   +    +  F+GRG +    G +
Sbjct: 227 GSSLVPCFAFGESDIFEQVDNNPRTRIYKFQEIVKKIAGFTVPFFYGRGLLNKTFGLM 284


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 290 FWGRGAVKH*IGTLKGAPDL 349
           +WGR   +H +G L+G P+L
Sbjct: 227 YWGRAIARHFVGQLRGGPNL 246


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 437 RSRCA*PPHPPRLMRRYRARQVALSGKCA---RNPYLFIFLNTFKYVSAHETITLINA 601
           R   A PPHPP++M    +  +A  G  A   ++  + I + + + +SAH  +  I A
Sbjct: 323 RHGSATPPHPPKIMPDDISASLANKGATAVTIKDTIMVINIQSNRKISAHGFLASIFA 380


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +2

Query: 212 VDSNAKGRKTVYQGVAHYVNNHPIQVF----WGRGAVKH*IGT 328
           V+ +AKG   V  G   Y N H IQV      G G  K  +GT
Sbjct: 44  VEPSAKGAHLVVGGDGRYFNFHAIQVIAAIAAGNGVEKIIVGT 86


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 87  VKSAHFLTNRPKSEKSLINQKNRP 158
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 173 VVPVWNKSPLLKNVDSNA-KGRKTVYQGVAHYVNNHPIQVFWGRGAVKH 316
           ++P    S L+    S   + R+  YQ + H   N PIQ+     A++H
Sbjct: 377 ILPPNTLSTLVNTASSPIPRSRQLAYQCLLHIAQNSPIQIASEGFAIRH 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,546
Number of Sequences: 5004
Number of extensions: 46724
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)