Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0828.Seq
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411 30 1.3
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 30 1.7
04_04_0710 - 27453135-27453480,27453647-27453726,27453893-274541... 29 2.2
08_01_0038 - 282431-283954 28 5.1
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209... 28 6.7
11_06_0669 - 26084906-26087350 27 8.9
11_05_0017 - 18416977-18417936 27 8.9
07_01_1163 - 11011362-11011760,11011803-11011847,11011880-110120... 27 8.9
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 27 8.9
>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
Length = 229
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 423 RPSARSFRFLPFLSRHVRRLSPSSSKSGAP 334
R SA R+ PFLSR +R S S+ SG P
Sbjct: 191 RRSATDGRYAPFLSRQPQRSSAGSTHSGKP 220
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 435 YTCQRPSA-RSFRFLPFLSRHVRRLSPSSSK 346
Y CQ P ++FRF+ SRH R+ SS K
Sbjct: 1313 YECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343
>04_04_0710 -
27453135-27453480,27453647-27453726,27453893-27454107,
27454227-27454329
Length = 247
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 172 CCSSLEQESTIKERGFQRQRAKNRLSGRGPLREQPPYSGFLGPRCRKALNRNPKGS 339
CC +L +E+ ++ Q RA +S + PP + + P C + N N S
Sbjct: 149 CCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSS 204
>08_01_0038 - 282431-283954
Length = 507
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 FPTVAQ-PEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRKNPL*IKRIDRDRVECCSS 183
FP++A+ P R C + Y VK R LL+QLI + R + L + D ++ S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286
Query: 184 LEQE 195
++QE
Sbjct: 287 IQQE 290
>03_03_0248 +
15819264-15819460,15820691-15820729,15820797-15820936,
15821150-15821225,15822866-15823160,15823236-15823342,
15823442-15823489,15823568-15823853,15823954-15823961,
15824083-15824184,15824426-15824553,15824664-15824741,
15825047-15825145,15825247-15825302
Length = 552
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +1
Query: 142 IKRIDRDRVECCSSLEQESTIKERGFQRQRAKNRLSGRGPLREQ---PPYSGFLGPRCRK 312
IK++ R S +E+E +ER + R+ R+S R P REQ P Y + R R+
Sbjct: 249 IKKLSRRERRKVSQIERE---RER--EAARSVGRVSYRDPYREQRRSPSYDSY--SRGRR 301
Query: 313 ALNRNPKGSPRFRA*RGK 366
+ +R+ SP + G+
Sbjct: 302 SRSRSRSRSPSYSRRHGR 319
>11_06_0669 - 26084906-26087350
Length = 814
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Frame = -3
Query: 305 HLGPK---KPE*GGCSRSGPRPDR-RFF----ALWRW 219
H GPK + E GCSR GP P+ FF +LW W
Sbjct: 681 HKGPKYLRELELSGCSRLGPAPELFEFFIHLRSLWLW 717
>11_05_0017 - 18416977-18417936
Length = 319
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 278 GGCSRSGPRPDRRFFALWRWNP 213
G R GP RRFF RW P
Sbjct: 275 GVARRPGPTQGRRFFGCGRWTP 296
>07_01_1163 -
11011362-11011760,11011803-11011847,11011880-11012014,
11012101-11012994
Length = 490
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 245 RRFFALWRWNPRSLIVDSCSKLEQHSTLSRSILL 144
RR+ LWR P +L VDS S E+ T+ S +L
Sbjct: 58 RRWRPLWRSTPLNLDVDSLSTQERKRTMFVSRIL 91
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 435 YTCQRPS-ARSFRFLPFLSRHVRRLSPSSSK 346
Y C P A++FRF+ SRH R+ S K
Sbjct: 1169 YVCHEPGCAQTFRFVSDFSRHKRKTGHSVKK 1199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,186
Number of Sequences: 37544
Number of extensions: 319272
Number of successful extensions: 785
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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