Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0828.Seq
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    31   0.86 
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    29   3.5  
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        29   3.5  

>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +1

Query: 157 RDRVECCSSLEQESTIKERGFQRQRAKNRLSGRGPLREQPPYSGFLGPRCRKALNRNPKG 336
           RDR          S  + R   R+R +     R P R  PP S   GP  R  +  NP+ 
Sbjct: 93  RDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSPPRSRLPGPERRDVMPFNPRH 152

Query: 337 SP 342
           SP
Sbjct: 153 SP 154


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = -2

Query: 549 RKINK*GFRAHFPESAT*RAL*RRIKRGGCGGYAQRDRYTCQRPSAR---SFRFLPFLSR 379
           RK++   FR+H  E+A  R        GG GG   RDR   + P A    S ++ P  SR
Sbjct: 175 RKLDDTKFRSHEGETAYIRVREDNSSGGGSGG-GGRDRSRSRSPRAERRASPKYSPRRSR 233

Query: 378 HVRRLSPSSSKSGAPFRVPI*CFTAPRPQ 292
             R  S S S+S +  R P     +P PQ
Sbjct: 234 S-RSRSRSRSRSRSASRSP---SRSPSPQ 258


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = -2

Query: 549 RKINK*GFRAHFPESAT*RAL*RRIKRGGCGGYAQRDRYTCQRPSAR---SFRFLPFLSR 379
           RK++   FR+H  E+A  R        GG GG   RDR   + P A    S ++ P  SR
Sbjct: 175 RKLDDTKFRSHEGETAYIRVREDNSSGGGSGG-GGRDRSRSRSPRAERRASPKYSPRRSR 233

Query: 378 HVRRLSPSSSKSGAPFRVPI*CFTAPRPQ 292
             R  S S S+S +  R P     +P PQ
Sbjct: 234 S-RSRSRSRSRSRSASRSP---SRSPSPQ 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,250,185
Number of Sequences: 27780
Number of extensions: 270805
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)