Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0828.Seq
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    28   4.2  
At4g33630.2 68417.m04778 expressed protein                             28   5.6  
At4g33630.1 68417.m04777 expressed protein                             28   5.6  
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138...    28   5.6  
At1g64960.1 68414.m07363 expressed protein                             27   7.4  
At1g53760.1 68414.m06117 expressed protein                             27   9.8  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 154 DRDRVECCSSLEQESTIKERGFQRQRAKNRLSGR 255
           D+D  E CS+ E ES ++E    +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 420 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 322
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 420 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 322
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 567

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 232 AKNRLSGRGPLREQPPYSGFLGPRCRKALNRNPKGS 339
           AKNRL G G     PP S    PR R   ++   GS
Sbjct: 3   AKNRLPGSGHTTPSPPASPRRSPRYRHGRSKAAAGS 38


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 301 RCRKALNRNPKGSPRF 348
           RCR  +NRNPK   RF
Sbjct: 552 RCRTLINRNPKAGARF 567


>At1g53760.1 68414.m06117 expressed protein
          Length = 272

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 455 PPHPPRLMRRYRARQVALSGKCARNPYLFIFLNTFKYVSAHETITLIN 598
           P   PRL+RR R R +A+SG      YL   +      SA   + L N
Sbjct: 119 PSLDPRLVRR-RLRHIAMSGTILHKKYLVGSVTLLPLTSAFMVLPLPN 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,878
Number of Sequences: 28952
Number of extensions: 250815
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)