Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0825.Seq
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    30   0.24 
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    26   3.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.0  

>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 630 TKEIYPYQDRTVKEIVIHKDFNKGNLFYDIALLFLETPVDSPRTWEWRV 484
           T+E++ ++D +  E+V  KD       Y      +E  +D+P T  WR+
Sbjct: 367 TQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDELDNPETRGWRI 415


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 417 LVLPPTSGEXLTPAGARSLAGGRHATPTFGANLLESRGTTELCRRTG 557
           LVLP T    LTP        GR       AN++ S  +T L  ++G
Sbjct: 22  LVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVPSTSLLTKSG 68


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +3

Query: 405  FLPELVLPPTSGEXLTPAGARSLAGGRHAT---PTFGANLLESRGTTELC 545
            FLP    PP++ +  TP  + S AG           G  LLE+  +  +C
Sbjct: 946  FLPSFAPPPSNDKQSTPQVSNSAAGKMELNFKIHKIGLRLLENYESKPIC 995


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,166
Number of Sequences: 5004
Number of extensions: 41875
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)