Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0825.Seq
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 35 0.046
09_04_0414 - 17393780-17394826 30 1.3
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 30 1.3
01_06_0283 + 28170040-28170186,28170296-28170895 30 1.7
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 2.3
02_05_1316 - 35679456-35679538,35679660-35679722,35679824-356799... 29 2.3
12_02_1131 - 26358339-26360609 29 3.0
03_06_0063 - 31391870-31392679 29 3.0
08_01_0312 + 2764744-2767390,2767632-2767990 28 7.0
01_03_0030 - 11787280-11787393,11787487-11787714,11788828-117889... 28 7.0
08_02_0932 - 22710818-22711033,22711375-22711581,22712282-22712545 27 9.3
04_04_0103 + 22808670-22810007 27 9.3
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 9.3
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 35.1 bits (77), Expect = 0.046
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -1
Query: 556 PVLRHSSVVPRDSSRFAPNVGVACLPPARERAPAGVRXSP 437
P R V RDSSR AP V C P ER PA +P
Sbjct: 311 PSTRERRPVTRDSSRKAPEVATMCRPSTAERRPATRELAP 350
>09_04_0414 - 17393780-17394826
Length = 348
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 58 LVGSSIVSLAGDLVVDPGPQVRDVHVNSWSAVLSAAYAPGYDAVLDIAILLIVYG 222
L+G+ +V+ + D++ G RDV ++ + V + Y P + A + +LL +G
Sbjct: 58 LMGTDVVAASADVLT--GVSSRDVAIDPANDVRARLYLPSFRATAKVPVLLYFHG 110
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 533 NRAMS*NRFPLLKSLCITISLTVLS-*YGYISFV 631
N M N F LLK LCIT+S LS Y Y+S V
Sbjct: 329 NTPMVPNTFLLLKYLCITLSAVTLSPSYDYLSLV 362
>01_06_0283 + 28170040-28170186,28170296-28170895
Length = 248
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 184 AVLDIAILLIVYGAHEGRSPVPPAVSLSGSP 276
A+ ++++ + GA GRSP P+ S SG+P
Sbjct: 76 AITLVSVISVFLGATAGRSPASPSSSSSGAP 106
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 506 PERGSGVSPTGQGARPRRRQVFAT--GWGKDKFGKEGRYQVIMKKVDVPVVDRNT 348
P +P G GAR RRQ W + K EG + M ++VP D NT
Sbjct: 933 PRLLGAAAPPGPGARENRRQCLKVLRLWLERKIMPEGILRRYMDDIEVPNDDANT 987
>02_05_1316 -
35679456-35679538,35679660-35679722,35679824-35679938,
35680271-35680372,35680667-35680736,35681182-35681273,
35681542-35681622,35681697-35681740,35681829-35681976
Length = 265
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -1
Query: 520 SSRFAPNVGVACLPPARERAPAGVRXSPLVGGR 422
S RFAP VA PP R RA A SP + R
Sbjct: 6 SLRFAPPASVAAPPPRRPRAVASSASSPALQRR 38
>12_02_1131 - 26358339-26360609
Length = 756
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 163 AYAPGYD-AVLDIAILLIV--YGAHEGRSPVPPAVSLSGSPPAHMNVECNWKNRPSRV 327
AYA G D A + + L + Y E R P+PP V G PP H+ + +W R+
Sbjct: 555 AYAGGEDCAAVQVWRLRDIGPYKLTESRPPIPPDV---GVPPVHVAGKMHWMGEQRRL 609
>03_06_0063 - 31391870-31392679
Length = 269
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 190 LDIAILLIVYGAHEGRSPVPPAVSLSGSPPAHMNVECN 303
L + +L++ G H R PP +S S PPA +C+
Sbjct: 64 LALCLLMLARGGHH-RVQAPPPLSASAPPPAGAEFKCS 100
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 210 EKNRYVQYGIVAWGIGCGEDGTPGVYVDVSNLRTWIDDKVAGKG 79
EK+ +G+V I G Y + +N+ W+ KVAG G
Sbjct: 892 EKSDVYSFGVVLLEILTGRRSVEAEYGEGNNIVDWVRRKVAGGG 935
>01_03_0030 -
11787280-11787393,11787487-11787714,11788828-11788916,
11789516-11789763,11789858-11790146,11790295-11790454,
11791228-11791404
Length = 434
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 435 SGEXLTPAGARSLAGGRHATPTFGANLLESRGT 533
SGE P+G S RH +G N+ + +GT
Sbjct: 119 SGEGSVPSGTLSTPAVRHLAKQYGLNISDIQGT 151
>08_02_0932 - 22710818-22711033,22711375-22711581,22712282-22712545
Length = 228
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 214 VYGAHEGRSPVPPAVSLSGSPPAH 285
+ GA G P+PP LS PP H
Sbjct: 5 IAGARAGVIPLPPTWDLSAPPPIH 28
>04_04_0103 + 22808670-22810007
Length = 445
Score = 27.5 bits (58), Expect = 9.3
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = -3
Query: 503 ERGSGVSPTGQGARPRRRQVFATGWGKDKFGKEGRYQVIMKKVDV-PVVDRNTCQSQLRR 327
E G +P A R+R+V G G G E + +DV P DR++ ++
Sbjct: 318 EPNEGPTPRESHADKRKREVGGGGGG----GGEEMQLSLPADIDVVPEADRSSIDELMKL 373
Query: 326 TRLGRFFQLHSTFMCAGG-EPDKDTAGGTGDRPSCAP*TM 210
+ L T GG E KD A G G S AP T+
Sbjct: 374 Y----YSCLQGTDTDGGGGEQGKDVAAGAGGDGSVAPETV 409
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 374 DVPVVDRNTCQSQLRRTRLG 315
+ PV+ R TC Q+RRT LG
Sbjct: 523 EAPVLRRGTCLEQVRRTDLG 542
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,624,361
Number of Sequences: 37544
Number of extensions: 354741
Number of successful extensions: 1370
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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