Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0825.Seq
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    46   3e-05
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    38   0.004
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    31   0.51 
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    31   0.51 
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -2

Query: 234 PLVCPIDYEKNRYVQYGIVAWGIGCGEDGTPGVYVDVSNLRTWID 100
           PL+C  D     +   G+V+WGIGC   G PGVY +V +  TWI+
Sbjct: 244 PLMCARD---GHWELTGVVSWGIGCARPGMPGVYGNVHSASTWIN 285


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 210 EKNRYVQYGIVAWGIGCGEDGTPGVYVDVSNLRTWIDDKVAGK 82
           E   +V  G+++WG GC +   PG+Y  V+   +WI   + G+
Sbjct: 221 EDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWISAIINGQ 263


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 237 SPLVCPIDYEKNRYVQYGIVAWGIG---CGEDGTPGVYVDVSNLRT 109
           +PL C +D E N+YVQ GIV+   G     ED +  V V+ S ++T
Sbjct: 203 APLECVLDVENNKYVQVGIVSGLYGREMDKEDNSTMVVVNCSEVQT 248


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 422 PSPNQWRXPDAGGGALPGRWETRHSH 499
           P+P + + P  GGG L GR++T  SH
Sbjct: 710 PTPKKLQQPKQGGGPLAGRYDTVQSH 735


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 422 PSPNQWRXPDAGGGALPGRWETRHSH 499
           P+P + + P  GGG L GR++T  SH
Sbjct: 710 PTPKKLQQPKQGGGPLAGRYDTVQSH 735


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 506 PERGSGVSPTGQGARPRRRQVFATGWGKDKFGKEGRY 396
           P+RG+G +P G G+  R    F  G G  + G E  +
Sbjct: 112 PDRGTGTTPRGGGSVGRASGAFFAGRGGGRIGGENGF 148


>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 604 QDSQGNRDTQGLQ*GEPVLRHSSVVPRDSSRFAPNVGVACLPPARERAPAGVRXSPL 434
           +DSQG R +     G   +  +S  P  SS   PN   + +P +    P G    P+
Sbjct: 137 EDSQGQRSSPSSPTGSETVVSTSSPPELSSESTPNTSGSVIPTSPVFKPNGYSSMPM 193


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
 Frame = +1

Query: 1   FFFTLKIFISY*----TILFDLGLVGSSIVSLAGDLVVD 105
           F F+L++F S      T++F + L+ ++  S++GD+V+D
Sbjct: 694 FLFSLELFPSGHCTDCTLIFPISLLSNNCTSMSGDIVID 732


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,277,517
Number of Sequences: 27780
Number of extensions: 254431
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)