Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0825.Seq
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.35 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.61 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 559 EPVLR-HSSVVPRDSSRFAPNVGVACLPPARERAPAGVRXSPLVGGRTS 416
           EPV+  +SS  P      AP+   +  PPA+  A AG + S   GG T+
Sbjct: 502 EPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAG-QPSKRNGGETN 549


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 201 RYVQYGIVAWGIGCGEDGTPGVYVDVSNLRTWI 103
           R V  GI++WG  CG+   P     V +   WI
Sbjct: 362 RLVNIGIISWGAECGK--YPNGNTKVGSYIDWI 392


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 83  RDTILDPTSPRSNKIV*YEI 24
           + +ILDP+S   N++  YE+
Sbjct: 242 KGSILDPSSDSQNEVGFYEV 261


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 627 KEIYPYQDRTVKEIVIHKDFNKGNLFYDIALL 532
           K+ YP  D    +I  +    +  LFY + L+
Sbjct: 212 KKYYPCCDEPYPDIFFNITLRRKTLFYTVNLI 243


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 244 VPPAVSLSGSPPAHMNVECNWKNRPSRVLLNW 339
           +P   SLS SPP    +E +   R   +   W
Sbjct: 185 IPIVRSLSKSPPNDEGIETDSDRRKGSIARCW 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,234
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)