Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0825.Seq
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06740.1 68418.m00762 lectin protein kinase family protein co...    30   1.5  
At5g53700.1 68418.m06672 hypothetical protein                          29   1.9  
At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase, p...    28   5.9  
At1g07180.1 68414.m00764 pyridine nucleotide-disulphide oxidored...    27   7.8  

>At5g06740.1 68418.m00762 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 652

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +1

Query: 262 LSGSPPAHMNVECNWKNRPSRVLLNWLWQVFR 357
           +SG  P+++ V+ N +N  +  ++NWLW+++R
Sbjct: 527 VSGKKPSYVLVKDN-QNNYNNSIVNWLWELYR 557


>At5g53700.1 68418.m06672 hypothetical protein
          Length = 248

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 205 LLIVYGAHEGRSPVPPAVSLSGSPPAHMNV 294
           L I++ A EG SPV  A+ LSG+     NV
Sbjct: 66  LFIIFHAKEGESPVDKALELSGTDVGGWNV 95


>At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase,
           putative similar to mevalonate diphosphate decarboxylase
           [Arabidopsis thaliana] gi|2288887|emb|CAA74700
          Length = 419

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 186 GIVAWGIGCGEDGTPGVYVDVSNLRTWID 100
           G V W +G  EDG+  V V +++ + W D
Sbjct: 171 GFVKWTMGSKEDGSDSVAVQLADEKHWDD 199


>At1g07180.1 68414.m00764 pyridine nucleotide-disulphide
           oxidoreductase family protein contains similarity to
           alternative NADH-dehydrogenase GI:3718005 from [Yarrowia
           lipolytica], SP|P32340 Rotenone-insensitive
           NADH-ubiquinone oxidoreductase, mitochondrial precursor
           (EC 1.6.5.3) (Internal NADH dehydrogenase)
           {Saccharomyces cerevisiae} ; contains Pfam profile
           PF00070: Pyridine nucleotide-disulphide oxidoreductase
          Length = 510

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 512 IRPERGSGVSPTGQGARPRRRQVFATGW 429
           + P+R  G++PT +G +P R  V  +GW
Sbjct: 57  LEPQRYDGLAPTKEGEKP-RVLVLGSGW 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,805,825
Number of Sequences: 28952
Number of extensions: 247837
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)