Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0824.Seq
         (583 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.4  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   5.8  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.6  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.6  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 468 DRGGHRSGRCCGITVGQI 521
           D   HR GRCC    G +
Sbjct: 95  DEPVHRPGRCCKTCPGDL 112


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 292 WCDHYVFTPSTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPK 459
           WCD  +   +   NTP  ++ K+     ++ S    AV +P A  Y  F+ I   K
Sbjct: 19  WCDQTIGLITFDINTPSFKLSKIRSFLNITAS----AVLLPFA-IYHIFMHIVPTK 69


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 467 RPWWSPERPV 496
           RPWW   +PV
Sbjct: 72  RPWWERYQPV 81


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 6   GTTKVEMTSARKYVVKNHFKGVPKR 80
           G TKV  +  R+Y   N ++ + KR
Sbjct: 144 GATKVYNSMKREYYWPNMYRTIKKR 168


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 467 RPWWSPERPV 496
           RPWW   +PV
Sbjct: 73  RPWWERYQPV 82


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 467 RPWWSPERPV 496
           RPWW   +PV
Sbjct: 73  RPWWERYQPV 82


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 6   GTTKVEMTSARKYVVKNHFKGVPKREDYELVEFVIPPLI-DARSSLKP 146
           G + +++    K +++NH++   + E  EL   ++ PL+  A +S  P
Sbjct: 386 GLSLLQVAQIFKNLLENHYEEFVRYELGELAPGLVGPLLTSALASWSP 433


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,340
Number of Sequences: 336
Number of extensions: 2766
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)