Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0824.Seq
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    34   0.017
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    28   0.87 
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   3.5  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   8.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   8.1  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 256 YPIGTRVVAHKGWCDHYVFTPSTQPN--TPKDRIYKLPDLQGLSPSLGVGAVGMPGATAY 429
           Y  G  VV   GW + Y F          P +  YKLP +        VG++GMP  TAY
Sbjct: 97  YKPGMDVVFVSGW-EEYTFVSKQALGFLQPINNPYKLPLIDF------VGSLGMPSQTAY 149

Query: 430 FGFLEICKPK 459
            G   I KPK
Sbjct: 150 CGLKHIGKPK 159



 Score = 29.1 bits (62), Expect = 0.50
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 501 GITVGQIAKIKGCRVIGFAGTDDKVK 578
           G   GQ+AK  G  V+G  G+D+K K
Sbjct: 174 GQMAGQLAKAMGLHVVGSVGSDEKFK 199


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = +2

Query: 122 RREVLVKAEWISVDPYLRAYNSYQAVPYDQFSYQVGVVVESKDSTIR*ERELLRTKDGAT 301
           RR   V A +I V  YLR  N++ ++    FS    ++     S I   R+     +  T
Sbjct: 728 RRRTNVLAYFIQVCDYLRELNNFASL----FS----IISALNSSPIHRLRKTWANLNSKT 779

Query: 302 TTSSLLVRNLTLQRIVFINYQIC 370
             S  L+ NLT  R  F NY+ C
Sbjct: 780 LASFELLNNLTEARKNFSNYRDC 802


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 313 TPSTQPNTPKDRIYKL-PDLQGLSPSLGVGAVG 408
           TP  QP  PK R ++L PDL  ++   G  ++G
Sbjct: 148 TPKPQPGNPKPRYFRLKPDLSVIN-RYGFNSIG 179


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 18  VEMTSARKYVV--KNHFKGVPKREDYELVEFVIPPL 119
           +++ S R + +   NHF G+P   D  LV+F I  L
Sbjct: 584 IQLVSKRSHPMAFSNHFIGLPDNADPGLVDFSISML 619


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 278 LRTKDGATTTSSLLVRNLTLQRIVFINYQICRDCRRRWA 394
           LR+   A  T   ++RN +       ++ +CRDC  + A
Sbjct: 55  LRSSSVACNTCLKIIRNDSFHCTKCFDFDVCRDCYAKQA 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,502
Number of Sequences: 5004
Number of extensions: 44744
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)