Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0824.Seq
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0759 + 6894556-6894628,6894653-6894738,6895039-6895121,689... 42 5e-04
12_01_0756 + 6869100-6869327,6869943-6870123,6870233-6870399,687... 40 0.002
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787 38 0.004
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474... 38 0.004
12_01_0764 + 6934570-6934726,6935150-6935316,6935408-6935490,693... 38 0.008
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 38 0.008
12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691... 37 0.010
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 37 0.013
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 34 0.072
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 28 4.7
09_04_0500 - 18120287-18122233 28 6.2
02_02_0662 - 12736904-12737214,12737632-12737914 28 6.2
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 27 8.2
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 27 8.2
04_03_0176 - 12273045-12273115,12273214-12273413,12273617-122737... 27 8.2
02_05_1118 + 34241819-34242217,34242350-34242522,34243499-342436... 27 8.2
>12_01_0759 +
6894556-6894628,6894653-6894738,6895039-6895121,
6895278-6895650
Length = 204
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKV 575
G VGQ+AKIKGC V+G AG+DDKV
Sbjct: 30 GQIVGQLAKIKGCYVVGSAGSDDKV 54
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 406 GMPGATAYFGFLEICKPK 459
GM G TAY GF E+ KPK
Sbjct: 6 GMHGLTAYVGFFEMSKPK 23
>12_01_0756 +
6869100-6869327,6869943-6870123,6870233-6870399,
6870523-6870605,6870716-6871094
Length = 345
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKVK 578
G VGQ+AKI GC V+G AG+D+KVK
Sbjct: 169 GQIVGQLAKITGCYVVGSAGSDEKVK 194
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 322 TQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPK 459
T N PK ++K+ + S G +G+ G TAY GF E+ KPK
Sbjct: 110 TLVNNPKPYLHKI-NYPEFPLSYYTGVLGIAGLTAYGGFFEVSKPK 154
>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
Length = 345
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKVK 578
G VGQ AK+ GC V+G AG+DDKV+
Sbjct: 169 GQLVGQFAKLMGCYVVGSAGSDDKVR 194
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 397 GAVGMPGATAYFGFLEICKPK 459
G +GM G TAY GF EIC P+
Sbjct: 134 GLLGMAGFTAYVGFHEICAPR 154
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 36 RKYVVKNHFKGVPKREDYELV 98
+K V++NH G PK D ELV
Sbjct: 6 KKIVLRNHVTGFPKESDMELV 26
>01_06_1628 +
38745964-38746480,38747116-38747282,38747325-38747440,
38747718-38748114
Length = 398
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1
Query: 385 SLGVGAVGMPGATAYFGFLEICKPK 459
S +G +GMPG TAY GF EIC PK
Sbjct: 166 SYHLGLLGMPGFTAYAGFYEICSPK 190
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKV 575
G VGQ+AK+ GC V+G AGT+ K+
Sbjct: 205 GQIVGQLAKLHGCYVVGSAGTNQKM 229
>12_01_0764 +
6934570-6934726,6935150-6935316,6935408-6935490,
6935588-6935966
Length = 261
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKV 575
G VGQ+AKI GC V+G AG+D+KV
Sbjct: 85 GQIVGQLAKITGCYVVGSAGSDEKV 109
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 397 GAVGMPGATAYFGFLEICKPK 459
G +GMPG TAY GF E+ KPK
Sbjct: 50 GILGMPGLTAYGGFFEVAKPK 70
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKV 575
G VGQ+AKI GC V+G AG+D+KV
Sbjct: 182 GQIVGQLAKIAGCYVVGSAGSDEKV 206
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 289 GWCDHYVFTPSTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPK 459
G C ++ TQP T ++K+ + L S G +G+ G TAY F E+ KPK
Sbjct: 116 GLCGWEEYSLITQPET----LHKI-NHPDLPLSYYTGVLGVTGLTAYAAFFEVGKPK 167
>12_01_0760 +
6910325-6910558,6911305-6911455,6911949-6912115,
6912227-6912309,6912395-6912773
Length = 337
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKV 575
G VGQ+AKI GC VIG AG D+KV
Sbjct: 161 GQVVGQLAKITGCYVIGSAGYDEKV 185
Score = 33.9 bits (74), Expect = 0.095
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 397 GAVGMPGATAYFGFLEICKPK 459
G +GMPG TAY GF ++ KPK
Sbjct: 126 GILGMPGLTAYAGFFDVPKPK 146
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKV 575
G VGQ+AKI GC V+G AG+D+KV
Sbjct: 170 GQIVGQLAKIIGCYVVGSAGSDEKV 194
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 397 GAVGMPGATAYFGFLEICKPK 459
G +GMPG TAY GF E+ KPK
Sbjct: 135 GILGMPGLTAYAGFFEVSKPK 155
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 34.3 bits (75), Expect = 0.072
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 501 GITVGQIAKIKGCRVIGFAGTDDKV 575
G VGQ AK+ GC V+G AGT+ KV
Sbjct: 168 GSLVGQFAKLAGCYVVGCAGTNAKV 192
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 104 CYTASDRREVLVKAEWISVDPYLRAYNSYQAV 199
C DR LV + +DPY R +N +QA+
Sbjct: 334 CSDGWDRTTQLVALACLLLDPYYRTFNGFQAL 365
>09_04_0500 - 18120287-18122233
Length = 648
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 328 PNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAY 429
PN PK + K L GL S+ VG G+ AY
Sbjct: 185 PNNPKGFVGKTLGLPGLKRSVPVGETGLREVAAY 218
>02_02_0662 - 12736904-12737214,12737632-12737914
Length = 197
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 313 TPSTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMP 414
+P +P K YK LSPSL V AVG+P
Sbjct: 18 SPLPEPPPAKPGSYKHGGSGALSPSLAVKAVGVP 51
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 433 QNRQSRPASQPPLRPATATIPADLVVYKYD 344
Q + P++ PP AT +P+D + Y D
Sbjct: 291 QTQDQPPSTPPPDTRATRAVPSDCITYSQD 320
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 421 SRPASQPPLRPATATIPADLVVYKYDPLE 335
+RPA QPP P T +P ++++ P +
Sbjct: 725 ARPAQQPPRPPVTQPLPPPPPLHQHQPYQ 753
>04_03_0176 -
12273045-12273115,12273214-12273413,12273617-12273714,
12274573-12274629,12274710-12274846,12275085-12275142,
12275620-12275718,12275827-12275885,12278554-12278624,
12280763-12281019
Length = 368
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 201 PTTSSVIKWALLSNQRIALSDRNESCCAQRMVRPLRL 311
P+ + V+ W L S++ I++++R S A + P RL
Sbjct: 295 PSQARVLAWPLRSSRGISVTERRASRSASAQLVPFRL 331
>02_05_1118 +
34241819-34242217,34242350-34242522,34243499-34243660,
34243762-34243903,34244320-34244544,34244649-34244711,
34244817-34244891,34245198-34245404,34247274-34247465,
34247515-34247634
Length = 585
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 111 PPLIDARSS--LKPNGSASTRI*GLTTL-TKLYPTTSSVIKWALLSNQR 248
PPL+ +S + NG + G + + TKL TTSS+IK AL +R
Sbjct: 521 PPLVQGATSTQVSRNGREREKYIGSSMIWTKLDVTTSSIIKLALTHPRR 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,922,478
Number of Sequences: 37544
Number of extensions: 314753
Number of successful extensions: 995
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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