Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0824.Seq
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)                   29   2.8  
SB_9585| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 498 CGITVGQIAKIKGC-RVIGFAGTDDKVKW 581
           CG   GQIAKI GC +++G  G+++K ++
Sbjct: 172 CGSAAGQIAKIFGCGKLVGICGSEEKCQY 200



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 119 DRREVLVKAEWISVDPYLRA 178
           ++ E+LVK  ++SVDPY+R+
Sbjct: 38  EQGEILVKTLYLSVDPYMRS 57


>SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)
          Length = 755

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 3   QGTTKVEMTSARKYVVKNHFKGVP 74
           +G+ K    S+R + +KN+FKG+P
Sbjct: 703 EGSLKDNRRSSRSFSIKNYFKGIP 726


>SB_9585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/48 (20%), Positives = 29/48 (60%)
 Frame = +2

Query: 230 VVVESKDSTIR*ERELLRTKDGATTTSSLLVRNLTLQRIVFINYQICR 373
           ++ + ++ T +  RE+   ++ A+ T++++   + + RIVF ++ + R
Sbjct: 48  IITQGEEETCKGRREISENQNEASVTNNIIQVTILVSRIVFKSFPVYR 95


>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 455 GLQISKKPK*AVAPGIPTAPTPSDGDNPCRSGSL*IRSFGVLGCVLGVKT 306
           GL+         + G+P+A TP+ G N   S S  I   G+L   +G+ T
Sbjct: 845 GLRADDAASGTASAGMPSAHTPAPGSNSAWSASSVIELAGLLVSSIGLYT 894


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,023
Number of Sequences: 59808
Number of extensions: 363410
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)