Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0824.Seq
         (583 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.       25   2.4  
AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione S-tran...    24   3.1  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   3.1  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   5.5  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   7.2  

>EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.
          Length = 481

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 436 NQNRQSRPASQPPLRP 389
           NQN Q +P  QPP  P
Sbjct: 89  NQNEQQQPRPQPPKTP 104


>AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione
           S-transferase u1 protein.
          Length = 233

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 295 CDHYVFTPSTQPNTPKDR 348
           C+ Y  T    PN PKDR
Sbjct: 73  CEKYAPTSDLYPNDPKDR 90


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 473 WWSPERPVLWDHCRSNS 523
           WW+PER  L + C+  S
Sbjct: 310 WWTPERAQLRELCKEAS 326


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 473 WWSPERPVLWDHCR 514
           WW+P   VL ++CR
Sbjct: 293 WWTPAIEVLCENCR 306


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 57  HFKGVPKREDYELVEFVIPPLIDARSSLKPNGSAST 164
           HFK +  RED    E      + AR++ + N S  T
Sbjct: 151 HFKQIVDREDGSFDEVPNSAFVVARTAFRDNSSYYT 186


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,844
Number of Sequences: 2352
Number of extensions: 11187
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)