Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0824.Seq
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical pr...    37   0.009
Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical pr...    37   0.009
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    27   9.7  
L07143-2|AAB37087.3|  437|Caenorhabditis elegans Protein kinase ...    27   9.7  

>Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical
           protein M106.3b protein.
          Length = 365

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 498 CGITVGQIAKIKGC-RVIGFAGTDDK 572
           CG   GQIA+I+GC +VIG  G+DDK
Sbjct: 187 CGSLAGQIARIEGCSKVIGICGSDDK 212


>Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical
           protein M106.3a protein.
          Length = 373

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 498 CGITVGQIAKIKGC-RVIGFAGTDDK 572
           CG   GQIA+I+GC +VIG  G+DDK
Sbjct: 195 CGSLAGQIARIEGCSKVIGICGSDDK 220


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -1

Query: 445 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDPLEC*VAY*E*RRSGRTILCAQQL 272
           F RN N    PA  P + P  A AT  A+L  Y+Y P      + +  + G T++     
Sbjct: 574 FFRNHNTLGEPAQDPAVWPSVAAATKIANLFRYQYLP-HLFSLHFQASKDGLTVVRPVFF 632

Query: 271 SFLSDSAIL 245
            F +DSA L
Sbjct: 633 EFPTDSATL 641


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 445 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 341
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 641 FFRNHNTIGAPAQDPAVWPSVAAATKKANLFRYQYLP 677


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 42  YVVKNHFKGVPKREDYELVEFVIPPLI 122
           Y + + F GVPK  DY+   F +P L+
Sbjct: 4   YSIPSGFHGVPKFIDYQFSFFTVPVLL 30


>L07143-2|AAB37087.3|  437|Caenorhabditis elegans Protein kinase
           protein 31 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 120 IDARSSLKPNGSASTRI*GLT---TLTKLYPTTSSVIKWALLSNQR 248
           I AR+ L  +G       GLT   T+ +L+P T S I+W  + +Q+
Sbjct: 257 IAARNCLYGDGKVKISDFGLTRRGTIYQLHPETKSPIRWLAVCSQK 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,504,480
Number of Sequences: 27780
Number of extensions: 255902
Number of successful extensions: 681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)