Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0823.Seq
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6M9D8 Cluster: Related to cyclin-supressing protein ki...    35   2.0  
UniRef50_A2FR67 Cluster: Putative uncharacterized protein; n=2; ...    34   3.4  

>UniRef50_Q6M9D8 Cluster: Related to cyclin-supressing protein
           kinase; n=3; Sordariomycetes|Rep: Related to
           cyclin-supressing protein kinase - Neurospora crassa
          Length = 399

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = -3

Query: 444 EEHSEVCKQILFKGSAARGAASRVNDKNSENENAFNIVMFIVN**LDTFLIVIFVTVRIA 265
           EE+ E C Q LF  S A  AA+ V+++  E+ NA       +    + + I   VT  + 
Sbjct: 57  EEYDEFCNQSLFGSSEADQAATAVSNEQDEDGNAEVDPGVTIGDYQNCYYITSGVTADVY 116

Query: 264 RTVNRKLKLVHLSNNDRLNN 205
           R  +R LK++  + N   +N
Sbjct: 117 RAGDRALKVIVETRNIEPHN 136


>UniRef50_A2FR67 Cluster: Putative uncharacterized protein; n=2;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 328

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = +1

Query: 235 YEFQLPINCTRNPNCYKYNY*KCIQ----LSVNYEHHNVKGILIFTIFIVNTGRGTPRRG 402
           YEF+     T + NC   NY + I     ++   E  NVK  + FT  +   G  T R+G
Sbjct: 174 YEFENTCRYTNDKNCPYTNYTELIMNLLPINAGMEAGNVKNFIKFTQIMRKYGNETSRKG 233

Query: 403 PLK*NLLTDFTMFLNGYNKL*FTYGAILNNPN 498
                    F+M L  + KL F Y   LN  N
Sbjct: 234 AGDDQHYLTFSMALGHFKKL-FKY-KFLNYSN 263


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,846,109
Number of Sequences: 1657284
Number of extensions: 9466792
Number of successful extensions: 20225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20218
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)