Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0823.Seq
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.1  

>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 96  YLNIEIVNEPRKEVERLQTKGTREE*IE 179
           Y+N   +NEP+   E++ +K  +EE +E
Sbjct: 227 YINCMTINEPKAIFEKIHSKIVKEEILE 254


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 507 LLCIECNHQSIFRMQCKNVL*QIYLARLNRARPLQPRSLPL 629
           +LC  C H+      C N++ Q +  +L RAR + P  +P+
Sbjct: 548 ILCDYCKHK------CSNIMEQDWFVQLARARGVIPLHIPI 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,569
Number of Sequences: 5004
Number of extensions: 41873
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)