Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0823.Seq
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.6  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 441 EHSEVCKQILFKG--SAARGAAS-RVNDKNSENENA 343
           E   +CKQIL +   S   GA+S +  +KN + +NA
Sbjct: 2   EQPNICKQILKRSAESEFEGASSPKKRNKNPQPKNA 37


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 133 RSRDCRLKERERNESRQPNLRRADVIKTIIVT*MYEFQLPINCTRNPNCYKYNY*KCIQL 312
           RSRD      ER  SR+P +  +   KTI     Y++    NC +    Y  NY + I +
Sbjct: 66  RSRD----RTERERSREPKIISSLSNKTIHNNNNYKYNYNNNCKK--LYYNINYIEQIPI 119

Query: 313 SVNYEHHN 336
            V   + N
Sbjct: 120 PVPVYYGN 127


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 441 EHSEVCKQILFKGSAARG 388
           E  E  K+IL KG+ ARG
Sbjct: 331 EFREAFKRILTKGARARG 348


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 553 HCIRKID**LHSMHNNGL 500
           HCI++I   +H  H+NG+
Sbjct: 13  HCIQQILESVHHCHHNGV 30


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 241 FQLPINCTRNPNCYKY 288
           FQ+ IN T N N  KY
Sbjct: 130 FQMSINNTNNNNTNKY 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,809
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)