Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0823.Seq
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68400.1 68414.m07814 leucine-rich repeat transmembrane prote...    30   1.5  

>At1g68400.1 68414.m07814 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           from [Petunia integrifolia]
          Length = 670

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -3

Query: 246 LKLVHLSNNDRLNNVGAS*VRLSRF--IPLAFL*SAISRPPSLVRLRFLCLNSIRLAEHR 73
           LKL+ LSNN    N   S   L+R   + L+F   +   PP L  L  L   ++RL  +R
Sbjct: 116 LKLLFLSNNQFSGNFPTSITSLTRLYRLDLSFNNFSGQIPPDLTDLTHLL--TLRLESNR 173

Query: 72  FNVQPPIAN 46
           F+ Q P  N
Sbjct: 174 FSGQIPNIN 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,772,630
Number of Sequences: 28952
Number of extensions: 208445
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)