Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0822.Seq
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.57 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   3.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.0  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +1

Query: 460  DWSDHALWWPTRNKWLSDQNTPWTMTGSTRTLTGARCNAT 579
            DW+     W     W S   +PW  T +TR  T  R   T
Sbjct: 1034 DWTTKPSTW-----WSSTTTSPWWTTTTTRRTTTTRPTTT 1068


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 511 DQNTPWTMTGSTRTLTGARCNATFSSN 591
           D   P  +TGST    GAR NA  +S+
Sbjct: 37  DGGKPPELTGSTNGDGGARSNADSTSH 63


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 511 DQNTPWTMTGSTRTLTGARCNATFSSN 591
           D   P  +TGST    GAR NA  +S+
Sbjct: 193 DGGKPPELTGSTNGDGGARSNADSTSH 219


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 553 LTGARCNATFSSNGKKV 603
           +T  +CN TFS   KKV
Sbjct: 215 VTSEKCNLTFSWYSKKV 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,303
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)