Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0822.Seq
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.7  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    25   7.6  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   7.6  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   10.0 

>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 495 SSRP-PEGMVRPIFLELWNNKISFKQTLELGW 403
           S RP P+ +   IFL LWN  I +     + W
Sbjct: 198 SERPIPQSLFLMIFLTLWNCFIPYSILFSMNW 229


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 120 AHLEMTKSIPLLPPT 76
           AH +M  ++PLLPPT
Sbjct: 358 AHPQMRSNVPLLPPT 372


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 356 KKSFTTTKKTYLYSTWY*HNLKIFDNRFFLKILPLQYLKDITVN 225
           K S      + + STW   NLKI+ ++  + ++ L  LK +  N
Sbjct: 323 KHSSPVKGNSSISSTWTPSNLKIYHSKNSMGLMDLDALKTVASN 366


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 562 ARCNATFSSNGKKVAIDYF 618
           A+ NA FS    K AIDYF
Sbjct: 7   AKGNAAFSKKDYKTAIDYF 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,252
Number of Sequences: 5004
Number of extensions: 50025
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)