Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0822.Seq
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527...    29   2.6  
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458...    29   4.5  
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460...    28   7.8  
04_04_0805 + 28184394-28185239                                         28   7.8  

>02_01_0706 +
           5270233-5270326,5270767-5270914,5271018-5271089,
           5271153-5271263,5271363-5271434,5271533-5271604,
           5272126-5272197,5272281-5272346,5272426-5272491,
           5272601-5272971,5273203-5273456,5273886-5274157,
           5274333-5274474,5275174-5275313,5275381-5275537,
           5275797-5275965,5276048-5276088
          Length = 772

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 372 GPFGNEKILYYYKKNLPIFNLVLAQSKNIRQ*IFFKDLATTIPK 241
           G  G E + +Y  K LP+FN   + + + R+ + F ++A  IP+
Sbjct: 90  GWLGLELLKFYSLKILPVFNFFASLNHDDRRDVSFNNIAGEIPR 133


>10_08_0429 +
           17845303-17845431,17845508-17845684,17845782-17845895,
           17846386-17846520,17847659-17847790,17847919-17848071,
           17848574-17848709,17849338-17849443,17849538-17849730,
           17849803-17849963,17850227-17850442,17850732-17850997,
           17851505-17851779,17851871-17852327,17853973-17854055,
           17854260-17854469,17854897-17855373,17855462-17855743,
           17855910-17856236,17856418-17856507,17856788-17856899,
           17857004-17857104,17857524-17857568
          Length = 1458

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 606 SDFFSVRAKCCIASGPGQRPRRTRHGPGCVL 514
           +DF +   KC   SGPG   R+  HG  CVL
Sbjct: 626 TDFTTADEKCI--SGPGTTKRKELHGTTCVL 654


>09_06_0201 -
           21545189-21545494,21545593-21545743,21545835-21546072,
           21546158-21546365,21546446-21546639,21546721-21546819,
           21546886-21546922,21548242-21548775
          Length = 588

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 34  CLTFEVPTSFGSTKCRW**RNRFCHFQMGLFVAN*PTDV--TNLIQEFELLFETF 192
           C+   +  SF   K +   RNR  H ++ L V +   DV   NL+Q+FE LF  F
Sbjct: 208 CILTVLCISFAWLKIKGKRRNRQKHRELILDVMSTSDDVGKRNLVQDFEFLFVKF 262


>04_04_0805 + 28184394-28185239
          Length = 281

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 448 EFKKDWSDHALWWPTRNKWLSDQNTPWTM-TGSTRTLTG 561
           + + + +D A+WWP +N   S ++  + +  G TR L G
Sbjct: 91  QLEPEVADTAVWWPAKNGTFSVKSAYYLLFAGRTRCLLG 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,859
Number of Sequences: 37544
Number of extensions: 291364
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)