Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0822.Seq
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.    44   1e-04
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 448 EFKKDWSDHALWWPTRNKWLSDQNTPWTMTGST 546
           + ++DWSDHALWWP + +WL    +     G T
Sbjct: 50  DVERDWSDHALWWPEKRRWLQHTRSTLDQNGIT 82


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 448 EFKKDWSDHALWWPTRNKWLSDQNTPWTMTGST 546
           + ++DWSDHALWWP + +WL    +     G T
Sbjct: 50  DVERDWSDHALWWPEKRRWLQHTRSTLDQNGIT 82


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 421 LFETNLVVPEFKKDWSDHALWWPTRNKWLSDQNTPWTMTG 540
           LFET L++P+ K    D+  W   RN W  D N P T  G
Sbjct: 492 LFET-LILPQMK----DNHFWANARNIWGHDLNMPSTSLG 526


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 160 IQEFELLFETFYLSYLNRQSHRLTVISFRYCSGKIFKKNLLSNI 291
           ++EF+ LF +  LSY+  Q      +  RY  G+   KN+  ++
Sbjct: 238 VKEFQQLFNSDQLSYIYYQRENYNAVVTRY-GGRFSLKNMFGSL 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,812
Number of Sequences: 27780
Number of extensions: 274080
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)