Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0822.Seq
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23850.1 68418.m02800 expressed protein                             28   5.0  
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    27   8.7  
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    27   8.7  
At1g04700.1 68414.m00467 protein kinase family protein low simil...    27   8.7  

>At5g23850.1 68418.m02800 expressed protein
          Length = 542

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 487 PTRNKWLSDQNTPWTMTGSTR-TLTGARCNATF--SSNGKKVAIDYF 618
           P   +W+ +   PW+ TG TR  L  A+  ATF  +  G K+ ++ F
Sbjct: 140 PDYFRWIHEDLRPWSRTGITREALERAKKTATFRLAIVGGKIYVEKF 186


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 456 LELWNNKISFKQTLELGWLRR*AN*LQIGPFGNEKILYYY 337
           LE  N  +  KQT+ L W R  AN      +GN+ +  YY
Sbjct: 358 LEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYY 397


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 456 LELWNNKISFKQTLELGWLRR*AN*LQIGPFGNEKILYYY 337
           LE  N  +  KQT+ L W R  AN      +GN+ +  YY
Sbjct: 356 LEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYY 395


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 496 NKWLSDQNTPWTMTGSTRTLTGARCNATFSSN 591
           N W++  N P +   +T+   G+  N++FS N
Sbjct: 493 NSWINRDNNPDSFDQATKKQDGSNSNSSFSPN 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,104,299
Number of Sequences: 28952
Number of extensions: 250653
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)