Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0821.Seq
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   5.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   5.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   5.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   5.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   5.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   5.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   5.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 656 ARAGTPTDLPTASSVSAPTQILHYKH 733
           A    P  LPT  SV A    LH+ H
Sbjct: 449 ATTAAPPQLPTEESVDALCNTLHHWH 474


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 NIDFIIYLIVINYFRPCAI 192
           N DFIIY  + +++ PC I
Sbjct: 340 NTDFIIYSSLSSFYIPCII 358


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 NKVYNNE*RAKFRFFPI*YIQKINDP 282
           N  YNN    K +++ I YI++I  P
Sbjct: 99  NNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 NKVYNNE*RAKFRFFPI*YIQKINDP 282
           N  YNN    K +++ I YI++I  P
Sbjct: 99  NNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 NKVYNNE*RAKFRFFPI*YIQKINDP 282
           N  YNN    K +++ I YI++I  P
Sbjct: 99  NNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 NKVYNNE*RAKFRFFPI*YIQKINDP 282
           N  YNN    K +++ I YI++I  P
Sbjct: 99  NNNYNNNNYKKLQYYNINYIEQIPIP 124


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 205 NKVYNNE*RAKFRFFPI*YIQKINDP 282
           N ++NN    K +++ I YI++I  P
Sbjct: 310 NTIHNNNNYKKLQYYNINYIEQIPVP 335


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 205 NKVYNNE*RAKFRFFPI*YIQKINDP 282
           N ++NN    K +++ I YI++I  P
Sbjct: 321 NTIHNNNNYKKLQYYNINYIEQIPVP 346


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 205 NKVYNNE*RAKFRFFPI*YIQKINDP 282
           N ++NN    K +++ I YI++I  P
Sbjct: 321 NTIHNNNNYKKLQYYNINYIEQIPVP 346


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 205 NKVYNNE*RAKFRFFPI*YIQKINDP 282
           N ++NN    K +++ I YI++I  P
Sbjct: 310 NTIHNNNNYKKLQYYNINYIEQIPVP 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,500
Number of Sequences: 438
Number of extensions: 3307
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)