Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0820.Seq
         (782 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CCA39 Cluster: hypothetical protein TTHERM_0028...    35   2.0  
UniRef50_A5IFH4 Cluster: Putative uncharacterized protein; n=1; ...    35   2.6  
UniRef50_Q6G3R2 Cluster: Anti-repressor protein; n=4; Rhizobiale...    33   8.1  

>UniRef50_UPI00006CCA39 Cluster: hypothetical protein
           TTHERM_00283010; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00283010 - Tetrahymena
           thermophila SB210
          Length = 1019

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 306 VITRFLAIMCKCIHNHIIVSVRYMLNSTNLGTLYFQ*SYIDSKGMPLSLYNFLLMVEINL 485
           +IT+F ++ C   HN I++ + +     +LG ++ Q    +  G  L +  +LL+  IN+
Sbjct: 216 LITQF-SMFCSHFHNKILI-LSFFFAGASLGVMFSQVFISNRLGQALQIKIYLLLQSINI 273

Query: 486 VLICIF 503
             +C F
Sbjct: 274 FCMCFF 279


>UniRef50_A5IFH4 Cluster: Putative uncharacterized protein; n=1;
           Legionella pneumophila str. Corby|Rep: Putative
           uncharacterized protein - Legionella pneumophila (strain
           Corby)
          Length = 273

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 617 SSLRPDFSFQFTVYTGK*IYVILVLFYQRKLKSK 718
           SS+RP  SFQF+VYT   ++++ V  ++  LK K
Sbjct: 145 SSVRPFVSFQFSVYTLLSVFIVFVFCFESDLKEK 178


>UniRef50_Q6G3R2 Cluster: Anti-repressor protein; n=4;
           Rhizobiales|Rep: Anti-repressor protein - Bartonella
           henselae (Rochalimaea henselae)
          Length = 243

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 294 SVMGVITRFLAIMCKCIHNHIIVSVRYML---NSTNLGTLYFQ*SYIDSKGMPLSLYN 458
           +V  + +R +A +C   H+H++  ++ ML   N+   G + F   Y+DSKG     YN
Sbjct: 16  TVQTMSSREIAELCGKRHDHVMRDIKKMLEELNAPKFGVVDFSGYYLDSKGESRPCYN 73


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,190,020
Number of Sequences: 1657284
Number of extensions: 11724451
Number of successful extensions: 16105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16103
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)