Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0820.Seq
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   3.6  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   6.4  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   8.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.4  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   8.4  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 743 LINSFMARICFLVFVGKTVLKLRKFIYLCTL*IGMKNQVSDYFFYW 606
           LI  F    C +V  GK   +L +   +    +G  +QV+DY   W
Sbjct: 227 LIGGFWFMQCDVV--GKVASQLAEDFQMALKHVGPSSQVADYRSLW 270


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
          protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -2

Query: 64 ICFNAFLYSF 35
          +CFN+++Y+F
Sbjct: 62 VCFNSYMYAF 71


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 103 ILQEIIDKSYVNKISN 150
           +LQEII KSY    +N
Sbjct: 51  LLQEIIPKSYFGTTTN 66


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 103 ILQEIIDKSYVNKISN 150
           +LQEII KSY    +N
Sbjct: 51  LLQEIIPKSYFGTTTN 66


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 AACKLDISDGQTFSFQTINLDP 266
           AACKL  S+GQ  S  + N  P
Sbjct: 74  AACKLYSSEGQQNSNYSSNSKP 95


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 740 INSFMARICFLVFVGKTVLKLRKFIYLCTL*IGMKNQV 627
           ++ F +   FLV +   +  L+  IY+  + IG KN +
Sbjct: 205 VDLFNSLFGFLVLLLVALTTLQLLIYIQVIVIGTKNTI 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,789
Number of Sequences: 336
Number of extensions: 3587
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)