Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0820.Seq
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   4.0  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    26   7.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.3  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 2   KLVRIYNNIIQKRI*ECIKTYNIIG 76
           +++ + NNI+QK+   C+ T N +G
Sbjct: 169 QIIDLKNNILQKKAISCLDTTNAVG 193


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 299 YTLNYPFTLLRWVQVNSLK*KSLSVTNIQFASSLLNC 189
           Y++   +  LR V +NS    +LS ++++ A+S LNC
Sbjct: 180 YSIFRTYGKLRSVTINSPTSATLSFSSLRSATSALNC 216


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 481 LISTIRRKLYRLNGIPFESI*LY*KYNVPKLVEFNIY 371
           LI + + KLY LN  PF ++    +++V + V+ N +
Sbjct: 337 LIFSFKEKLYPLNSSPFNTLSDVPQFDVSEFVDENSF 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,442
Number of Sequences: 5004
Number of extensions: 56272
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)