Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0819.Seq
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   114   1e-26
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    46   4e-06
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    38   0.002
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    33   0.059
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    29   0.72 
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    29   0.72 
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    27   2.2  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   6.7  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    26   6.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   6.7  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   8.9  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.9  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  114 bits (275), Expect = 1e-26
 Identities = 47/83 (56%), Positives = 68/83 (81%)
 Frame = +1

Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
           G+LLG      V++V+NS+A+PF+ED+K+ SVWFLDH+++E+M  MFKK+NA EK+VGWY
Sbjct: 44  GILLG-QNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWY 102

Query: 436 HTGPKLHQNDIAINELIRRYCPN 504
           HTGP+L  +D+ IN L+++Y PN
Sbjct: 103 HTGPQLRPSDLEINNLLKKYIPN 125



 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 43/86 (50%), Positives = 57/86 (66%)
 Frame = +3

Query: 495 LPKFRLVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHL 674
           +P   LVIID KPK +GLPT AY A++E+ DDG+ +SRTF H+PS I           HL
Sbjct: 123 IPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHL 182

Query: 675 LRDIKDTTVGSLSQRITNQLLGLKGL 752
           LRD +D +VG+L+ R+T Q   L+GL
Sbjct: 183 LRDTRDASVGTLATRVTQQAQSLQGL 208


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = +1

Query: 235 RESETSS---GVLLGCWRAKG-VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKK 402
           R+SE +    G LLG     G  +++ + FAVP +E  +   V   + +Y   MY +  K
Sbjct: 39  RKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEV---EMEYHRAMYHLHLK 95

Query: 403 VNAREKVVGWYHTGPKLHQNDIAINEL 483
            N RE VVGWY T P L      I  L
Sbjct: 96  ANPREVVVGWYATSPDLDAFSALIQNL 122


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = +1

Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
           G++LG +     + V + FA+P  +     SV  +D  + +NM  M K+    E VVGWY
Sbjct: 54  GLMLGEFVDDFTVRVVDVFAMP--QSGTGVSVEAVDPVFQKNMMDMLKQTGRPEMVVGWY 111

Query: 436 HTGP 447
           H+ P
Sbjct: 112 HSHP 115


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 292 LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 447
           L + +SFA+P +  +   +      +Y    + + K V   E V+GWYH+ P
Sbjct: 70  LIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHP 121


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 355 TRQICLCRLHQTGLRSCSIRLRHPWLSNNPIEHRY 251
           T++  +      G+R C +++ HPWL +   E +Y
Sbjct: 753 TKKCAMTTSRVLGVRICGMQVWHPWLQSYTFEDKY 787


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 362 SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPLLVSDSRFYSCG 219
           S  Q+ LSL +SSNGT  +  T   P+ L +PN T +  ++   Y  G
Sbjct: 182 SSKQSLLSLKNSSNGTVYVSTTLPCPVEL-KPNITAIDTAERNSYLWG 228


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 47  MNNNFVI*NRTATNPEYISKNTYVKIIKMPSQE 145
           + NNFV  N  A   E   K TY+ +  MPS E
Sbjct: 49  LKNNFVEENDNAVLKEEPGKYTYMSLFTMPSTE 81


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 480 VN*ALLPKFRLVIIDAKPKDLGLPT-EAYQAVEEVHDD 590
           VN    P   L + D+KP+ LG+ T + Y    +V DD
Sbjct: 561 VNLKAFPDHTLRVKDSKPESLGIDTVKQYTGYLDVEDD 598


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 74 YFILQSYYSLNYTKL 30
          YF+ Q +YS NYTKL
Sbjct: 13 YFVRQYFYSGNYTKL 27


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 332 TTKTNLSGSLTMIT 373
           TTK+NLSG+L M+T
Sbjct: 182 TTKSNLSGNLNMVT 195


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 298 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 447
           V +S +  F  DD +     L  + +E ++ +FK+ NA  +++GW ++ P
Sbjct: 794 VISSLSAIFIRDDTEND---LVTELVEKLF-LFKQYNACMQLIGWLNSDP 839


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 105 LLIYSGFVAVLFYITKLLFIKLHEIRVTYYYLL 7
           +++Y   + +L  +  L+   LH++RV  Y++L
Sbjct: 377 MMLYGFILGILALVVHLVLDVLHKVRVQPYFVL 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,268
Number of Sequences: 5004
Number of extensions: 59752
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)