Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0819.Seq
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 77 2e-14
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 52 5e-07
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 41 0.001
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 41 0.001
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 41 0.001
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 37 0.020
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 34 0.11
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 31 1.3
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 30 1.7
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 28 7.1
11_01_0292 - 2200714-2201478,2202691-2203395 28 9.3
10_06_0190 + 11628375-11628421,11628560-11628714,11628958-116290... 28 9.3
04_04_1449 - 33683791-33683940,33684036-33684110,33684849-336849... 28 9.3
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 76.6 bits (180), Expect = 2e-14
Identities = 32/52 (61%), Positives = 44/52 (84%)
Frame = +1
Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNA 411
GVLLG ++G +DV+NS+AVPF+EDDKD +WFLDH+Y E+M+ MFK++NA
Sbjct: 44 GVLLGT-SSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINA 94
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +3
Query: 669 HLLRDIKDTTVGSLSQRITNQLLGLKGLHSQ 761
HLLRD+KDTT+ +L+ +T++L LKGL ++
Sbjct: 166 HLLRDVKDTTISTLATEVTSKLAALKGLDAR 196
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +1
Query: 238 ESETSSGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARE 417
++E G LLG G + V NS+ VP +E + LD +Y NMY KVN +E
Sbjct: 39 QAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVA---LDIEYHHNMYASHHKVNPKE 95
Query: 418 KVVGWYHTG 444
+VGW+ TG
Sbjct: 96 VIVGWFSTG 104
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +3
Query: 669 HLLRDIKDTTVGSLSQRITNQLLGLKGLHSQ 761
HLL D+KDTT+G+L+ +T++L LKGL ++
Sbjct: 579 HLLMDVKDTTIGTLATEVTSKLAALKGLDAR 609
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +1
Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
G++LG + + V + FA+P + SV +DH + NM M K+ E VVGWY
Sbjct: 53 GLMLGEFVDDYTVRVVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWY 110
Query: 436 HTGP 447
H+ P
Sbjct: 111 HSHP 114
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +1
Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
G++LG + + V + FA+P + SV +DH + NM M K+ E VVGWY
Sbjct: 53 GLMLGEFVDDYTVRVVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWY 110
Query: 436 HTGP 447
H+ P
Sbjct: 111 HSHP 114
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 36.7 bits (81), Expect = 0.020
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +1
Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
G ++G R + V ++ NSF + D LD +LE ++KKV V+GWY
Sbjct: 71 GCVIGVQRGRTV-EIFNSFELVLDPVSGT-----LDRAFLEKKQELYKKVFPDFYVLGWY 124
Query: 436 HTGPKLHQNDIAINELI 486
TG + D+ I++ +
Sbjct: 125 STGSDVRDTDMQIHKAL 141
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +1
Query: 253 SGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGW 432
+G LLG VL+V+N F P EDD++ +Y M ++VN VGW
Sbjct: 58 TGQLLGL-DVGSVLEVTNCFPFPMREDDEEADAD--GANYQLEMMRCLREVNVDNNTVGW 114
Query: 433 YHT 441
Y +
Sbjct: 115 YQS 117
>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +1
Query: 253 SGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGW 432
SG ++G R G +DVS+ + + D LE ++KK V+GW
Sbjct: 71 SGCVIGVRRG-GTVDVSDILDILILHGPDPAT---FDRALLEKDQEIYKKAFPDLSVLGW 126
Query: 433 YHTGPKLHQNDIAIN 477
Y G +H D+ I+
Sbjct: 127 YSIGTNVHATDMGIH 141
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 30.3 bits (65), Expect = 1.7
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -3
Query: 656 FFSLLCTNFTWNMFKGPRSWCTIIVYFL 573
F++++C W +GP+ W ++YF+
Sbjct: 440 FWNIICVTAAWIKGEGPKIWFLAVIYFI 467
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 380 TCMVCSKRLTPGKKLLAGTTLDLNFIR 460
TC++C + +T KKLL G ++ +R
Sbjct: 259 TCIICREEMTTAKKLLCGHLFHVHCLR 285
>11_01_0292 - 2200714-2201478,2202691-2203395
Length = 489
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 701 HSGILDIS*QMLYSHFFSLLCTNFTWNMFKGPRSW--CTIIVYFLYCLVSFS 552
H GI+ +L S +LL TW F+ PR W C + +Y L+ +VS +
Sbjct: 434 HVGIVVAFVFLLLSLMGTLLMV--TWTRFRVPRFWGYCLMGLYILFTVVSIA 483
>10_06_0190 +
11628375-11628421,11628560-11628714,11628958-11629086,
11629234-11629508
Length = 201
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 352 WFLDHDYLENMYGMFKKVNAREKVVGWY 435
WFLD Y +N + + ++ AR WY
Sbjct: 12 WFLDGMYSDNSFSLETRIVARNSRAQWY 39
>04_04_1449 -
33683791-33683940,33684036-33684110,33684849-33684940,
33685020-33685106,33685460-33685615,33685706-33685804,
33686180-33686307,33687355-33687416
Length = 282
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 175 GGSSVSVAQCRGPF*PHE*NRESETSSGVL-LGCWRAKGVLDVSNSF 312
GG++++V++ P E R + V+ G WR GVL VS +F
Sbjct: 146 GGNAIAVSKDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAF 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,634,661
Number of Sequences: 37544
Number of extensions: 360180
Number of successful extensions: 874
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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