Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0819.Seq
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)              124   6e-29
SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)                       31   0.77 
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)                      30   1.8  
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)             29   3.1  
SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)          29   3.1  
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           28   9.5  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score =  124 bits (300), Expect = 6e-29
 Identities = 59/84 (70%), Positives = 67/84 (79%)
 Frame = +3

Query: 510 LVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIK 689
           LVIIDAKPKDL LPT+AY AVEEVHDDGTPT++TFEH+PSEI           HLLRDIK
Sbjct: 110 LVIIDAKPKDLRLPTDAYVAVEEVHDDGTPTTKTFEHIPSEIGAEEAEEVGVEHLLRDIK 169

Query: 690 DTTVGSLSQRITNQLLGLKGLHSQ 761
           + T G+LSQRITNQL  LKGLH++
Sbjct: 170 NLTAGTLSQRITNQLTSLKGLHAR 193



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +1

Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 408
           GVLLG  R KGVLDV+N FAVPFDEDD+D++VWFLDHDYLENMY MFKKVN
Sbjct: 39  GVLLGS-RRKGVLDVANCFAVPFDEDDRDQNVWFLDHDYLENMYAMFKKVN 88



 Score = 32.3 bits (70), Expect = 0.44
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 209 DHFNRMSKIGNQKRV 253
           DHFNRM K+G+QKRV
Sbjct: 23  DHFNRMGKVGSQKRV 37


>SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)
          Length = 195

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 256 GVLLGCWRAKG-VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGW 432
           G++LG  +  G  + V ++FA+P +  +   +     ++Y+       K V   E  +GW
Sbjct: 76  GLMLG--KVDGDTMIVMDAFALPVEGTETRVNAQAAAYEYMAAYIESAKSVGRLENAIGW 133

Query: 433 YHTGP 447
           YH+ P
Sbjct: 134 YHSHP 138


>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
          Length = 406

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = -3

Query: 428 PTTFSLALTFLNIPYMFSK*SWSRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPLL 249
           P+T SL  +  N P   S  S     +  SL +SSN  + L  TS    ++Q  + TP+ 
Sbjct: 197 PSTSSLEASS-NTPTALSATSLMSLPSTSSLKASSNSPSALSTTSLLSFSIQPSSATPIQ 255

Query: 248 VSDS 237
           VS S
Sbjct: 256 VSSS 259


>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
          Length = 339

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/70 (21%), Positives = 35/70 (50%)
 Frame = +1

Query: 289 VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 468
           ++D  +   VP +   +   + F  ++ ++  +  ++K +A     GW+H+G  LH  + 
Sbjct: 185 IIDSEHGNVVPINTPGE---ICFRGYNVMQGYWDDYEKTDAAIDSNGWFHSG--LHPGES 239

Query: 469 AINELIRRYC 498
           +  E I+ +C
Sbjct: 240 SSPEEIKEFC 249


>SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)
          Length = 532

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 307 SFAVPFDEDDKDKSVW--FLDHDYLENMYGMFKKVNARE 417
           S++V F ED   K  W  +++ DYL+   G   KVN R+
Sbjct: 482 SYSVSFSED---KKTWQKYVERDYLQKAMGAITKVNQRK 517


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 344 LSLSSSSNGTAKLFDTSKTPLALQQPNRTPLLVSDSRFYSCG*NGPRH 201
           L + S+     ++  TS TPL +  P  TPL     ++Y  G   PR+
Sbjct: 58  LEIYSAGITPVEIHRTSITPLEIHSPGITPLGNPQPKYYPSGNPQPRY 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,023,045
Number of Sequences: 59808
Number of extensions: 442604
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)