Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0819.Seq
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...   147   6e-36
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    47   1e-05
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...    36   0.041
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...    36   0.041
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    31   0.68 
AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...    29   2.7  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score =  147 bits (357), Expect = 6e-36
 Identities = 67/96 (69%), Positives = 77/96 (80%), Gaps = 5/96 (5%)
 Frame = +1

Query: 232 NRESETSS-----GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMF 396
           NR S+T S     GVLLG  +    LD+ NSFAVPFDEDDKDKS WFLD DYLE+MYGMF
Sbjct: 56  NRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLDMDYLESMYGMF 115

Query: 397 KKVNAREKVVGWYHTGPKLHQNDIAINELIRRYCPN 504
            KV A+EK+VGWYHTGPKLH+NDIAINE ++R+CPN
Sbjct: 116 YKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPN 151



 Score =  118 bits (285), Expect = 3e-27
 Identities = 56/84 (66%), Positives = 66/84 (78%)
 Frame = +3

Query: 510 LVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIK 689
           LVIIDA+PK++GLPTEAY  V+EVHDDGTP  +TFEHVPS+I           HLLRDIK
Sbjct: 154 LVIIDAEPKNIGLPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIK 213

Query: 690 DTTVGSLSQRITNQLLGLKGLHSQ 761
           D T G+LSQRIT+QL+GL+GL SQ
Sbjct: 214 DQTAGTLSQRITDQLMGLRGLQSQ 237


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 37/70 (52%)
 Frame = +1

Query: 232 NRESETSSGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNA 411
           N   E   G L+G +  KG + V+N FA+PF+E + D  +   D  + + M    KK + 
Sbjct: 31  NTGQEKCMGTLMGYYE-KGSIQVTNCFAIPFNESNDDLEI---DDQFNQQMISALKKTSP 86

Query: 412 REKVVGWYHT 441
            E+ VGW+ T
Sbjct: 87  NEQPVGWFLT 96


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +1

Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
           G++LG +     ++V++ FA+P  +     +V  +D  Y      + K V   E VVGWY
Sbjct: 53  GLMLGDFVDDYTINVTDVFAMP--QSGTSVTVESVDPVYQTKHMDLLKLVGRTENVVGWY 110

Query: 436 HTGP 447
           H+ P
Sbjct: 111 HSHP 114


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +1

Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
           G++LG +     ++V + FA+P  +     SV  +D  +   M  M K+    E VVGWY
Sbjct: 57  GLMLGEFVDDYTVNVIDVFAMP--QSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWY 114

Query: 436 HTGP 447
           H+ P
Sbjct: 115 HSHP 118


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 289 VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 447
           +LDV   FA+P +  +   +     ++Y+     M      +EKVVGWYH+ P
Sbjct: 93  ILDV---FALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHP 142


>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 368 SWSRNQTDLSLSSSSNGTAKLFDTSKTP 285
           +WS  +T L  S S++G+ KL+DT   P
Sbjct: 282 AWSPTETGLLASCSADGSIKLWDTRSAP 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,515,425
Number of Sequences: 27780
Number of extensions: 333477
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)