Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0819.Seq
(763 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 121 5e-28
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 119 2e-27
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 62 4e-10
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta... 42 6e-04
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 40 0.001
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 40 0.002
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 33 0.27
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 30 1.9
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 29 2.6
At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subun... 29 2.6
At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subun... 29 2.6
At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun... 29 3.4
At1g56020.1 68414.m06431 expressed protein 29 3.4
At2g35780.1 68415.m04390 serine carboxypeptidase S10 family prot... 29 4.5
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p... 28 5.9
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 28 5.9
At4g31750.1 68417.m04506 protein phosphatase 2C, putative / PP2C... 28 7.8
At3g25020.1 68416.m03127 disease resistance family protein conta... 28 7.8
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 28 7.8
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 121 bits (292), Expect = 5e-28
Identities = 55/95 (57%), Positives = 74/95 (77%), Gaps = 4/95 (4%)
Frame = +1
Query: 232 NRESETSS----GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFK 399
NR ++ SS GVLLG ++GV+DV+NS+AVPF+EDDKD S+WFLDH+Y E+M+ MFK
Sbjct: 32 NRVAKDSSKRVVGVLLGS-SSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFK 90
Query: 400 KVNAREKVVGWYHTGPKLHQNDIAINELIRRYCPN 504
++NA+E VVGWY TGPKL +ND+ ++ L Y PN
Sbjct: 91 RINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPN 125
Score = 83.8 bits (198), Expect = 1e-16
Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +3
Query: 495 LPKFRLVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTS-RTFEHVPSEIXXXXXXXXXXXH 671
+P LVIID +PK+LG+PT+AY AVEEV ++ T S + F HV +EI H
Sbjct: 123 VPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEH 182
Query: 672 LLRDIKDTTVGSLSQRITNQLLGLKGLHSQ 761
LLRD+KDTT+ +L+ +T +L LKGL ++
Sbjct: 183 LLRDVKDTTISTLATEVTAKLTALKGLDAR 212
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 119 bits (286), Expect = 2e-27
Identities = 49/83 (59%), Positives = 67/83 (80%)
Frame = +1
Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
GVLLG ++G +DV+NS+AVPF+EDDKD S+WFLDH+Y E+M+ MFK++NA+E +VGWY
Sbjct: 44 GVLLGS-SSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWY 102
Query: 436 HTGPKLHQNDIAINELIRRYCPN 504
TGPKL +ND+ ++ L Y PN
Sbjct: 103 STGPKLRENDLDVHALFNGYVPN 125
Score = 86.6 bits (205), Expect = 2e-17
Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Frame = +3
Query: 495 LPKFRLVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTSR-TFEHVPSEIXXXXXXXXXXXH 671
+P LVIID +PK+LG+PT+AY AVEEV ++ T S+ F HVP+EI H
Sbjct: 123 VPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEH 182
Query: 672 LLRDIKDTTVGSLSQRITNQLLGLKGLHSQ 761
LLRD+KDTT+ +L+ +T +L LKGL ++
Sbjct: 183 LLRDVKDTTISTLATEVTAKLTALKGLDAR 212
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/88 (37%), Positives = 46/88 (52%)
Frame = +1
Query: 241 SETSSGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREK 420
+E G LLG G +D+ NS+AVP +E +V D DY NM KVN++E
Sbjct: 49 AERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKET 105
Query: 421 VVGWYHTGPKLHQNDIAINELIRRYCPN 504
+VGWY TG ++ I++ R PN
Sbjct: 106 IVGWYSTGAGVNGGSSLIHDFYAREVPN 133
>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
putative similar to 26S proteasome-associated pad1
homolog [Homo sapiens] GI:1923256, 26S proteasome,
non-ATPase subunit [Mus musculus] GI:2505940; contains
Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 308
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +1
Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
G++LG + + + V + FA+P + SV +DH + NM M K+ E VVGWY
Sbjct: 54 GLMLGEFVDEYTVRVVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWY 111
Query: 436 HTGP 447
H+ P
Sbjct: 112 HSHP 115
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = +1
Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
G ++G R + V ++ NSF + +D S LD +LE ++KKV ++GWY
Sbjct: 60 GCVIGVQRGRTV-EIFNSFELLYDP-----STQTLDRSFLEKKQELYKKVFPDFYILGWY 113
Query: 436 HTGPKLHQNDIAINELI 486
TG ++D+ I++ +
Sbjct: 114 STGSDAEESDMHIHKAL 130
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +1
Query: 256 GVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWY 435
G ++G R + V ++ NSF + FD ++ LD +LE ++KKV V+GWY
Sbjct: 60 GCVIGLQRGRTV-EIFNSFELIFDP-----ALDTLDRSFLEKKQELYKKVFPDFYVLGWY 113
Query: 436 HTGPKLHQNDIAINELI 486
TG ++D+ I++ +
Sbjct: 114 STGSDATESDMHIHKAL 130
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +1
Query: 253 SGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGW 432
+G LLG VL+V+N F PF D D+ + +Y M ++VN VGW
Sbjct: 48 TGQLLGL-DVGSVLEVTNCF--PFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGW 104
Query: 433 YHT 441
Y +
Sbjct: 105 YQS 107
>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1147
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 365 WSRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPLLVSDSRFYSCG*NG 210
W +N+T+ +S ++ A D S+ L++PN LVS CG G
Sbjct: 1047 WEKNETETEISETAKALAWEIDISRLYEGLEEPNTNYRLVS---MIGCGEEG 1095
>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1121
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 365 WSRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPLLVS 243
W +N+T+ +S ++ A D S+ L++PN LVS
Sbjct: 1047 WEKNETETEISETAKALAWEIDISRLYEGLEEPNTNYRLVS 1087
>At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 351
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 298 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 447
V ++FA+P + + + ++Y+ K E VVGWYH+ P
Sbjct: 96 VMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHP 145
>At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 357
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 298 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 447
V ++FA+P + + + ++Y+ K E VVGWYH+ P
Sbjct: 96 VMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHP 145
>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit
5A (CSN5A) / c-JUN coactivator protein AJH2, putative
(AJH2) COP9 complex subunit CSN5-2; identical to c-Jun
coactivator protein AJH2 GI:3641312 from [Arabidopsis
thaliana]; identical to cDNA CSN complex subunit 5A
(CSN5A) GI:18056660; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 358
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 298 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAR-EKVVGWYHTGP 447
V ++FA+P + + + ++Y+ Y K+ R E VVGWYH+ P
Sbjct: 96 VMDAFALPVEGTETRVNAQDDAYEYMVE-YSQTNKLAGRLENVVGWYHSHP 145
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -3
Query: 344 LSLSSSSNGTAKLFDTSKTPLALQQPNRTPLLVSDSRFYSCG*NGPR 204
LSLSSSS+ + ++ D + L L +P+ P + SR +S N PR
Sbjct: 207 LSLSSSSSSSHEIDDLPRLSLDLDKPSANPF--APSRTHSRNLNQPR 251
>At2g35780.1 68415.m04390 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
Length = 452
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 337 CRLHQTGLRSCSIRLRHPWL--SNNPIEHRYSFLIPDFTHAVKMVH 206
C+ LRS R+RHPW+ + +P +YS + + K +H
Sbjct: 280 CKKEAAALRSRFSRVRHPWMWRAYDPCTEKYSGMYFNSPEVQKAMH 325
>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 909
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 468 SNK*VN*ALLPKFRLVIIDAKPKDLGLP-TEAYQAVEEV 581
+N+ VN A L RL+I+ + LGLP TEA+ +E +
Sbjct: 687 ANESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETI 725
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 468 SNK*VN*ALLPKFRLVIIDAKPKDLGLP-TEAYQAVEEV 581
+N+ VN A L RL+I+ + LGLP TEA+ +E +
Sbjct: 687 ANESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETI 725
>At4g31750.1 68417.m04506 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase 2C, Medicago sativa,
PID:g2582800
Length = 311
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 175 GGSSVSVAQCRGPF*PHE*NRESETSSGVL-LGCWRAKGVLDVSNSF 312
GG++++V++ P E R + V+ G WR GVL VS +F
Sbjct: 153 GGNAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAF 199
>At3g25020.1 68416.m03127 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 890
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 544 PRSLGLASIITSLNLGNNA*LTHLLL 467
P SLGL + +LNL NNA H+ L
Sbjct: 717 PESLGLLKALIALNLSNNAFTGHIPL 742
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 289 VLDV-SNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQ 459
VLD S + + D D DK +Y+E+MY +K+V K + HT P++ +
Sbjct: 131 VLDARSKAASKTLDIDYVDKENDLAAVEYVEDMYIFYKEVVNESKPQMYMHTQPEIDE 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,554
Number of Sequences: 28952
Number of extensions: 306092
Number of successful extensions: 870
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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