Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0815.Seq
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.83 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.83 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   1.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.4  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    22   4.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.4  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   5.8  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 396 SCDGCAGNSRR*IRQADARTARAGNQTS 313
           +CDGCAG  +R IR+      +A ++ S
Sbjct: 54  ACDGCAGFFKRSIRRNRQYVCKAKDEGS 81


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 396 SCDGCAGNSRR*IRQADARTARAGNQTS 313
           +CDGCAG  +R IR+      +A ++ S
Sbjct: 54  ACDGCAGFFKRSIRRNRQYVCKAKDEGS 81


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 615 PLSPAGVIAKRPAPIALPNSCA 680
           P  P GV  KR  P AL  +CA
Sbjct: 52  PCPPQGVDLKRVLPEALQTNCA 73


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -1

Query: 402 SLSCDGCAGNSRR*IRQADARTARAGNQTSRTDYA*FAYSTCR--RCAAGG 256
           +L+C+GC G  RR I +      + GN      Y       CR  +C + G
Sbjct: 202 ALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLSVG 252


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 621 SPAGVIAKRPAPIALPNSCA 680
           +P G   KR  P AL N CA
Sbjct: 54  TPEGEELKRDIPEALQNECA 73


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 431 TANDVRHHEYLYHVMDAPEIPDAEYDR 351
           TA  ++++ +    +DA E PD+ Y R
Sbjct: 190 TALKIKYNPFAKAFLDAKERPDSIYQR 216


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 621 SPAGVIAKRPAPIALPNSCA 680
           +P+G   K+  P AL N CA
Sbjct: 52  TPSGEELKKDIPDALKNECA 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,413
Number of Sequences: 336
Number of extensions: 4041
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)