Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0815.Seq
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    30   0.39 
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       29   0.51 
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    27   2.1  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.7  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.7  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 501 PVPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIAL 665
           P+P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L
Sbjct: 170 PLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRL 229

Query: 666 PNSCA 680
            +S A
Sbjct: 230 YSSDA 234


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +2

Query: 458 HIAPSMLKTPDKRGPGTNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRN 637
           H  P+ L+       G N+PYS    +    +LQ++  ++    +  +  ++ PFA + N
Sbjct: 514 HPQPTGLQRQTTGYTGNNNPYSRPLQSQSTGILQQQQQQSAPRLEPTKTGSNNPFAQFSN 573

Query: 638 ---SEEARTDRPSQQLRT 682
                 A   +P + +RT
Sbjct: 574 LPSQSTAPATKPMKPVRT 591


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 365 RREFPAHPSHDKDIHDGERRSQFCQLLFD*FHIAPSMLKTPDKRGPGTNSPYSESY 532
           R+ F  HP  + D    E RS+  Q L   F   P +++  D+R        SE++
Sbjct: 45  RKIFSLHPLTETDFLPNELRSEEDQTLIGIFWFLPPIIEGEDERSRFPRRSMSENH 100


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -2

Query: 428 ANDVRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPEL 306
           + D + H Y+  V+D+ +IPD  + +L+  +R ++ K+P +
Sbjct: 734 SQDEQPHYYV-DVLDSIKIPDTVFKKLIGSVRLVKEKNPAI 773


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/83 (24%), Positives = 31/83 (37%)
 Frame = +2

Query: 419 RRSQFCQLLFD*FHIAPSMLKTPDKRGPGTNSPYSESYYNSLAVVLQRRDWENPGVTQLN 598
           RR  F  LL++ F I  +         P +N P + S  N    V      E+P    L 
Sbjct: 303 RRISFFNLLYEKFVIGKTKEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLK 362

Query: 599 RLAAHPPFASWRNSEEARTDRPS 667
            + + P      ++    TD+ S
Sbjct: 363 VIGSSPYVVHSNHTNNTLTDKES 385


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = -2

Query: 419 VRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAASARYA 240
           ++ H+YLY ++ + ++P    D L+R +    T     +  DS         +  S RY 
Sbjct: 513 MKRHDYLYFILISDDVPPKLPDNLIRRVYAERTAWKAAL--DSEDYPTDPTVIRRSKRYG 570

Query: 239 MKYQCCH 219
              +  H
Sbjct: 571 YMMKLMH 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,553
Number of Sequences: 5004
Number of extensions: 61691
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)