Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0815.Seq
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 31 1.2
12_01_0426 - 3356350-3356745,3357604-3357921 30 1.6
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.6
05_03_0258 - 11153709-11156090 30 1.6
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 29 2.8
03_05_0519 - 25131614-25134778 29 3.8
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 3.8
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 29 5.0
02_05_0614 + 30358737-30358923,30359797-30359844,30360590-303606... 29 5.0
01_06_1738 + 39570411-39571931 29 5.0
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 6.6
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 28 8.7
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 28 8.7
07_01_0312 + 2214050-2214556 28 8.7
06_02_0151 - 12299935-12300189,12300713-12300986,12301072-123013... 28 8.7
06_01_0092 - 775290-775691 28 8.7
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 350 LMRELRELETKHPELITPDSPTQRVGAAPLAASARYAMKYQC--CH 219
L R L+++ETKHP P P +R+ P AS R KY+C CH
Sbjct: 431 LKRRLQDVETKHP-TAPPPPPVKRI---PSPASKR---KYECSECH 469
>12_01_0426 - 3356350-3356745,3357604-3357921
Length = 237
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 506 TNSPYSESYYNSLAVVLQRRDWEN 577
TN SESYY V +Q RDW N
Sbjct: 198 TNVIPSESYYFKFGVYMQHRDWSN 221
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 531 ITIHWPSFYNVV-TGKTLALPNLIALQH 611
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>05_03_0258 - 11153709-11156090
Length = 793
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 717 NINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 583
N+N YNL F + + + R +L ++++ GC R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 464 APSMLKTPDKRGPGTNSPYSESYYNSLAVVLQRR 565
AP+ TP + P +P S+ YY+ + LQRR
Sbjct: 562 APASAPTPAVQRPQLTAPESQPYYDEREIPLQRR 595
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 518 RANWYRAPACRGFLALMVRYGINRTTTDRTANDVRHHEYLYHVMDAPEI 372
+ANW+R C +A VR+ T V H L V+ PE+
Sbjct: 849 KANWFRVVGCLSHVATAVRWANRVRTWTHPTTTVLVHALLVAVVLCPEM 897
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -1
Query: 252 SQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKL--DGLAVSILYENG 79
S + +L L NVFD+E +L +K + + + +V C L D ++ N
Sbjct: 684 SLLEEPTKVLQLKNVFDQEEYLLLSKSELEEILEDVRVE-CASLHYGQDDRFGAVKSINV 742
Query: 78 VLVSAATRGDGTTGEDIT 25
V A++ D TTG+ IT
Sbjct: 743 VKYPASS--DNTTGDTIT 758
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 443 TTDRTANDVRHHEYLYHVMDAPEIPD--AEYDRLMRELRELETKHPELI 303
TTDR D+ +++ ++H+ D P +++D+ ++ + K P +I
Sbjct: 327 TTDRLVEDLDNYDIVFHIGDLPYANGYISQWDQFTAQVAPITAKKPYMI 375
>02_05_0614 +
30358737-30358923,30359797-30359844,30360590-30360666,
30361517-30361969,30362051-30362602,30362704-30362937
Length = 516
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = -2
Query: 407 EYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAASARYAMKYQ 228
EYL +DA +A R ELR L+ + PD R G P S +
Sbjct: 434 EYLAVQVDAVREAEAAVRRNGGELRLLDITEAMDLRPDGHPSRYGHPP-GGSVEGSFVVD 492
Query: 227 CCHW 216
C HW
Sbjct: 493 CLHW 496
>01_06_1738 + 39570411-39571931
Length = 506
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 353 RLMRELRELETKHPELITPDSPTQRVGAAPLAASA 249
RL R+L L +KH LI+P+ ++ +P ++S+
Sbjct: 6 RLARKLPSLISKHQRLISPEIDVEQAAESPASSSS 40
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 204 DEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA--VSILYENGVLVSAATR 55
D+E FL +R R KN +++TW LK A ++ L V + AA R
Sbjct: 50 DDEEFLVGGRRKGGRGKNAKQITWVLLLKAHRAAGCLASLASAAVALGAAAR 101
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 386 DAPEIPDAEYDRLMRELRELETKHPELITPDSP 288
D E+ D+E + L +L ELE K L+ P+ P
Sbjct: 126 DMAEMIDSEMESLSNQLEELEEKLKLLLLPNDP 158
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 503 RAPACRGFLALMVRYGINRTTTDRTANDVRHHEYLYHVMDAPEIPDAEY 357
+ P C G+L +NRTT+ R ++R + L++ DA++
Sbjct: 91 KGPLCAGYLREAFDAAMNRTTSSRPLCELRRNVTLFYDRFQLRFADADF 139
>07_01_0312 + 2214050-2214556
Length = 168
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 483 PPTSGGPVPIRPIVSRITIH-WPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPI 659
P + P+P P V + P+ V A+P + + +P PA + PA
Sbjct: 60 PAATLPPMPAVPTVPNAALPPMPAVPKVALPPMPAVPAVPTVPAVPAVPAASLPPMPAVP 119
Query: 660 ALPNSCAP 683
A+PN+ P
Sbjct: 120 AVPNAVLP 127
>06_02_0151 -
12299935-12300189,12300713-12300986,12301072-12301378,
12301467-12301714,12303181-12303480,12303564-12303620,
12304831-12304940,12305053-12305382
Length = 626
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 329 LETKHPELITPDSPTQRVGAAPLAASARYAMKY 231
L+ H E PD P GA PL S+ YA Y
Sbjct: 141 LDLDHKEFERPDFPQLFSGANPLVGSSPYAQCY 173
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 651 RASSLLRQLAKGGCAARR 598
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,496,833
Number of Sequences: 37544
Number of extensions: 473002
Number of successful extensions: 1406
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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