Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0815.Seq
         (726 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98266-2|CAA66920.1|  454|Homo sapiens ligase-like protein protein.    80   9e-15
AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.     31   3.2  
U66146-1|AAC51165.1|  592|Homo sapiens CD6e protein.                   30   7.3  
L78838-2|AAL40085.1|  592|Homo sapiens T cell surface glycoprote...    30   7.3  
BC070100-1|AAH70100.1|  418|Homo sapiens arrestin domain contain...    30   9.7  
BC028704-1|AAH28704.2|  418|Homo sapiens arrestin domain contain...    30   9.7  

>X98266-2|CAA66920.1|  454|Homo sapiens ligase-like protein protein.
          Length = 454

 Score = 79.8 bits (188), Expect = 9e-15
 Identities = 40/86 (46%), Positives = 58/86 (67%)
 Frame = -1

Query: 258 GFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENG 79
           G +++ H  PMLSL +VF  E   A+++R    L    +  +  ELK+DGLAV++ Y +G
Sbjct: 82  GLAKVEHPAPMLSLGDVFSLEELAAWDERTTKSL--GFQSPYNLELKIDGLAVALTYVDG 139

Query: 78  VLVSAATRGDGTTGEDITSNVRTIRA 1
            LV A+TRG+GT GED+T NV+TI+A
Sbjct: 140 RLVQASTRGNGTIGEDVTRNVKTIKA 165



 Score = 47.6 bits (108), Expect = 5e-05
 Identities = 22/52 (42%), Positives = 29/52 (55%)
 Frame = -2

Query: 422 DVRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAA 267
           D+  +   Y+  DAP + D  YD L   L  LE+  P+ +T DSPTQ VG A
Sbjct: 26  DLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQFVTQDSPTQNVGGA 77


>AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.
          Length = 1857

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +3

Query: 528  RITIHWP-SFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPN--SCAPEWRMA 698
            R+   WP S    +TGK  A  +L+  +    +P G   K P P+A PN    +  W M+
Sbjct: 1749 RVRGWWPFSKSKELTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPNRPDTSFSWFMS 1808

Query: 699  NCKR*YFV 722
              K  Y++
Sbjct: 1809 PFKCLYYL 1816


>U66146-1|AAC51165.1|  592|Homo sapiens CD6e protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 564 VTGKTLALPNLIALQHIPLS-PAGVIAKRPAPIALPNSCAPEWRMAN 701
           + GK  ALP ++  QH+P + PAG  + +P PI +P   +   R+ +
Sbjct: 426 IKGK-YALPVMVNHQHLPTTIPAGSNSYQPVPITIPKEDSQRHRVTD 471


>L78838-2|AAL40085.1|  592|Homo sapiens T cell surface glycoprotein
           CD6 isoform e protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 564 VTGKTLALPNLIALQHIPLS-PAGVIAKRPAPIALPNSCAPEWRMAN 701
           + GK  ALP ++  QH+P + PAG  + +P PI +P   +   R+ +
Sbjct: 426 IKGK-YALPVMVNHQHLPTTIPAGSNSYQPVPITIPKEDSQRHRVTD 471


>BC070100-1|AAH70100.1|  418|Homo sapiens arrestin domain containing
           4 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 9.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = -2

Query: 392 VMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR--VG-----AAPLAASARYAMK 234
           V++ P++PD    R ++ +  ++   P L+TP   TQ   VG     + P++ SA+   K
Sbjct: 145 VLERPKVPDQSVKRELQVVSHVDVNTPALLTPVLKTQEKMVGCWFFTSGPVSLSAKIERK 204

Query: 233 YQC 225
             C
Sbjct: 205 GYC 207


>BC028704-1|AAH28704.2|  418|Homo sapiens arrestin domain containing
           4 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 9.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = -2

Query: 392 VMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR--VG-----AAPLAASARYAMK 234
           V++ P++PD    R ++ +  ++   P L+TP   TQ   VG     + P++ SA+   K
Sbjct: 145 VLERPKVPDQSVKRELQVVSHVDVNTPALLTPVLKTQEKMVGCWFFTSGPVSLSAKIERK 204

Query: 233 YQC 225
             C
Sbjct: 205 GYC 207


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,943,952
Number of Sequences: 237096
Number of extensions: 2600217
Number of successful extensions: 9670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9665
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)