Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0815.Seq
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.42 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.55 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.73 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.96 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.0  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.0  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 395 DKDIHDGERRSQFCQLLFD*FHIAPSMLKTPDKRGPGTNSPYSE-SYYNSLAVV 553
           D+D+H GER +  C +      ++ S LK     GP      +    YNS+ ++
Sbjct: 619 DRDLHLGERTTLTCSVTRGDLPLSISWLKDGRAMGPSERVHVTNMDQYNSILMI 672


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 204 DEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGV 76
           DE  +    K+V DRL+N E     CE+  D  +VSIL+ + V
Sbjct: 392 DELLYQMIPKQVADRLRNGENPIDTCEM-FD--SVSILFSDVV 431


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -2

Query: 425 NDVRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 279
           N +R+H+ +YH   +      +    MRE    + +H + +T     Q+
Sbjct: 46  NSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQ 94


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 396 SCDGCAGNSRR*IRQ-ADARTARAGNQTS--RTDYA*FAYSTCRRCAAGGFSQ 247
           SC+GC G  RR I+Q    R      Q S  R +     Y   ++C A G S+
Sbjct: 83  SCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSR 135


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 402 SLSCDGCAGNSRR*IRQADARTARAGNQTSRTDYA*FAYSTCR 274
           +L+C+GC G  RR I +      + GN      Y       CR
Sbjct: 201 ALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECR 243


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 586 NARVFPVTTL*NDGQ*IVIRLTIGRIGTGPPLV 488
           N + F VT L NDG    + +   +IG G PL+
Sbjct: 74  NGKTF-VTILRNDGVPSSLNVISNKIGNGGPLL 105


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 600 ALQHIPLSPAGVIAKRPAPIALPNSC 677
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 PGTNSPYSESYYNSLAVVL 556
           PG NSPY+ +    +A+VL
Sbjct: 30  PGKNSPYTVTQAILIALVL 48


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 600 ALQHIPLSPAGVIAKRPAPIALPNSC 677
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,692
Number of Sequences: 438
Number of extensions: 4495
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)