Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0815.Seq
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57210.1 68418.m07147 microtubule-associated protein-related ...    29   4.1  
At5g27220.1 68418.m03247 protein transport protein-related low s...    28   5.5  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   7.2  
At1g27020.1 68414.m03294 expressed protein                             27   9.6  

>At5g57210.1 68418.m07147 microtubule-associated protein-related
           contains some similarity to microtubule-associated
           protein GI:5032258 from [Arabidopsis thaliana]; contains
           Pfam profile PF00566: TBC domain
          Length = 737

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 380 PEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAASARY 243
           P I  +  D L R+L E E + PE   PD+  +R        SA Y
Sbjct: 553 PHIRRSLLDDLSRQLGEKEIEPPEFPNPDTDIERSSTVSDTPSAEY 598


>At5g27220.1 68418.m03247 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 485  GFLALMVRYGINRTTTDRTANDVRHHEYLYHVMDAPEI 372
            GFL L+V YG+   T+    N +R   Y+ H   AP++
Sbjct: 949  GFLQLIVAYGLVHATSQ--DNTLRFASYVAHFKQAPKL 984


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 516 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 680
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 569 WENPGVTQLNRLAAHPPFASW 631
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,695
Number of Sequences: 28952
Number of extensions: 344216
Number of successful extensions: 980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)