Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0813.Seq
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.8  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 463 DGNVHG-GGVEGLKHDLGHLLPVGL 392
           D N  G G +EG+K  L H L +G+
Sbjct: 42  DSNGDGIGDIEGIKEKLDHFLEMGV 66


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 433 GLKHDLGHLLPVGLGVEGGFG 371
           GLK+  G  + VG+G+ GG G
Sbjct: 819 GLKNMAGVFIVVGVGIIGGIG 839


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 463 DGNVHG-GGVEGLKHDLGHLLPVGL 392
           D N  G G +EG+K  L H L +G+
Sbjct: 42  DSNGDGIGDIEGIKEKLDHFLEMGV 66


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 335  LRVAPEEHPVLLTEAPLNPKANREKM 412
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 343 DTQLIVEGVVPDLLHVI 293
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 444 PPCTLPSRPCSRCTPPVVPPVSARLRR 524
           PP  LP+ P S  T P +P ++  +RR
Sbjct: 430 PP--LPNMPGSMPTMPTMPSMAGPIRR 454


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 532 SHNVPIYEGYALPHAILRLDLAGRDLTDYLMKI 630
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 528 CLPQRTHLRRLRSAPRHPPS 587
           C P   +L ++ S P HPP+
Sbjct: 79  CDPVPGNLEQIGSRPLHPPA 98


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 99  GMCKAGFAGD 128
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,990
Number of Sequences: 438
Number of extensions: 4003
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)