Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0811.Seq
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103 31 0.99
02_01_0733 - 5477110-5477421,5478146-5478166 30 1.7
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 29 4.0
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 29 5.3
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 29 5.3
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 29 5.3
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 29 5.3
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 28 7.0
05_04_0234 + 19282196-19282818,19282948-19283347 28 7.0
08_01_0694 - 6136025-6136749,6137425-6137971 28 9.2
04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587 28 9.2
03_06_0491 - 34295484-34295793,34297160-34297644 28 9.2
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 9.2
>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
Length = 196
Score = 31.1 bits (67), Expect = 0.99
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 477
CGD+ C G+FC G D S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190
>02_01_0733 - 5477110-5477421,5478146-5478166
Length = 110
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +1
Query: 184 LSRRHPVYCLGNTSYTLPGRFVLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ 363
L+ PV Y + VLR+ ++ W +K+ K + R+ L Y C
Sbjct: 5 LNENVPVEFQEAHGYAAREKVVLRMRGRS--WTVRLKHTKGRRPRRERAVLRYGWHRFCA 62
Query: 364 DGFLACGDSTCIERGLFC--NGEKDCGDGSDEN 456
D LA GD TC R L +G D DG ++
Sbjct: 63 DNGLAVGD-TCFFRALRSAGSGAGDVDDGDGDH 94
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 537 EDGTVIPGDLPARDVPQMITITFDDA 614
EDG + GD R VP ++T FDDA
Sbjct: 48 EDGQLGHGDAEDRPVPTVLTAAFDDA 73
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = -3
Query: 419 LQKRPRSMQVESPQARKPS*QSGSSVYKRGFILRSLFLSLQFFTASFQSQVCFSIRRTNR 240
L + ++ +P +RK S + +++YKR + RSL L + + F V + R+++
Sbjct: 325 LDRLELDLRHNAPCSRKRSAVAMANLYKRDYSSRSLLLQFR-YKLDFDKSVDLFVHRSSK 383
Query: 239 P 237
P
Sbjct: 384 P 384
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 421 GEKDCGDGSDENSCDIDNDPNRAPPCDSSRVS 516
GE+D D SD++ D+D DPN + S++ S
Sbjct: 307 GEQD-SDDSDDDGMDVDMDPNSSKGSRSTKTS 337
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 307 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 480
+ +ER+ L E +G ++C ST G+K+ DG D+ D +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -2
Query: 462 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIFHSI 283
T++ + S+A +LF + F +V + I++ WF + + L+V E+TI +
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282
Query: 282 FP 277
P
Sbjct: 283 NP 284
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +1
Query: 433 CGD--GSDENSCDIDNDPNRAPPCDSSRVSFLTASAPRTAQ 549
CG G E+S D D +A CD++ V+ +++SAPRTA+
Sbjct: 378 CGQEPGEPESSPDGDALGEKAH-CDATVVALVSSSAPRTAE 417
>05_04_0234 + 19282196-19282818,19282948-19283347
Length = 340
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +1
Query: 361 QDGFLACGDSTCIERGLFCNGEKD-CGDGSDENSCDIDNDPNRAPPCDSSRV 513
Q G C + C R +C D CGDG P PP S V
Sbjct: 38 QAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSGCGPTPTPTPPSPSDGV 89
>08_01_0694 - 6136025-6136749,6137425-6137971
Length = 423
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 531 RSSQEGHTRGIAWRSSIWVVVNITRIFIRSIATVLFAVT 415
++ ++G G AWRS++W +V + IA +++A+T
Sbjct: 247 KAEEDGGMSGSAWRSTLWSIVGRVKWHGIGIA-LIYAIT 284
>04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587
Length = 230
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 69 DGGDKLTRRQRKMKAWNKNY-ARTRTPANGSGW---WPARATTVATSSSVLP 212
D G T+R RK +AW ++ A P G W + + + ++ S+ LP
Sbjct: 60 DDGSYRTKRSRKYEAWRVDFDAGILVPVKGFNWRALFISMSRAISVSAETLP 111
>03_06_0491 - 34295484-34295793,34297160-34297644
Length = 264
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 347 SVYKRGFILRSLFLSLQFFTASFQSQVCFSIRRTNRPG 234
++Y +G+ + + LS F + CF I+ N+PG
Sbjct: 61 NLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPG 98
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 388 STCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSRVSFLTASAPRTAQ*SPATY 567
S+C G + D DE++C +D D + PC+ + F S SPAT+
Sbjct: 526 SSCASTGQVGSQSMDAMQTQDESTCPVD-DITQRTPCE-LHIPFKNLSIKMADSDSPATW 583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,966,625
Number of Sequences: 37544
Number of extensions: 468713
Number of successful extensions: 1516
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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