Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0811.Seq
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70330.1 68414.m08091 equilibrative nucleoside transporter fa...    36   0.029
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain...    29   2.5  
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:...    29   3.3  
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP...    29   3.3  
At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibit...    28   5.8  
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    28   5.8  
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    28   5.8  
At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N domain-...    28   7.7  
At1g63670.1 68414.m07205 expressed protein                             28   7.7  

>At1g70330.1 68414.m08091 equilibrative nucleoside transporter
           family protein contains similarity to SWISS-PROT:Q14542
           equilibrative nucleoside transporter 2 (Equilibrative
           nitrobenzylmercaptopurine riboside-insensitive
           nucleoside transporter, Equilibrative NBMPR-insensitive
           nucleoside transporter, Nucleoside transporter, ei-type,
           36 kDa nucleolar protein HNP36, Hydrophobic nucleolar
           protein, 36 kDa, Delayed-early response protein 12)
           [Homo sapiens]
          Length = 450

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -2

Query: 537 RSRSSQEGHTRGIAWRSSIWVVVNITRIFIRSIATVLFAVTEKTAFNASRVAASEEAILT 358
           R +S ++G   G+AWR+++W +V  T++       VL  +   + F           +LT
Sbjct: 272 REKSEEKGSLTGLAWRTTLWDIV--TKVKSHGFGIVLLYMVTLSIFPGYITEDVHSELLT 329

Query: 357 EWF 349
           +W+
Sbjct: 330 DWY 332


>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  Pfam profile PF00564: PB1
           domain
          Length = 720

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 564 LPARDVPQMITITFDDAINNNNIELYKEIF*RQAQKPERLR 686
           LP+ D+  +I++T D+ ++N   E  + I    + KP RLR
Sbjct: 135 LPSEDLDSLISVTTDEDLDNMIEEYDRTISASNSTKPSRLR 175


>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
            GP:4586626
          Length = 1207

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 400  ERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDS 504
            +RGL CN  ++ G+GSDE+   ++ DP +   C S
Sbjct: 935  KRGL-CNDLRNRGNGSDESHDCLEIDPTQFDTCSS 968


>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
           TBP-interacting protein TIP120 GI:1799570 from [Rattus
           norvegicus]
          Length = 1219

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 489 SAMRFLACVLPDCFCSEDGTVIPG 560
           S +R L  VLPDC     G+++PG
Sbjct: 449 SVLRELVVVLPDCLADHIGSLVPG 472


>At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific protein
           Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
           PF04043: Plant invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 286 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDS 390
           A K+    N   K +P L T+   CQ+ F++ GDS
Sbjct: 82  AKKSASFANGAAKKEPSLKTQFQTCQEAFVSIGDS 116


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 466 YHKNFHQIHRHSPFRRYRKDRVQC 395
           YH +    H HS  RR  KDR +C
Sbjct: 245 YHSHRSSAHTHSSHRRRSKDREEC 268


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 24  WPRASCSPARLLMVTDGGDKLTRRQRKMKAWNKNYARTRTPANGSGWWPARATT 185
           W  A+   A    VT  G   T  Q K + W  +  + + P    GWWP+RA T
Sbjct: 717 WINATSGAAGAFDVTTKGILHTALQ-KCEYWRLSDPKGKPPGV-VGWWPSRAVT 768


>At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 619

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 123 NYARTRTPANGSGWWPARATTVATSSSVLP 212
           N + T   A GSGW PA  +  A S+  LP
Sbjct: 421 NASFTGAAAAGSGWHPANRSEAAQSNGYLP 450


>At1g63670.1 68414.m07205 expressed protein
          Length = 689

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 537 EDGTVIPGDLPARDVPQMITITFDD 611
           ED TVIPG++   ++ + I ++FDD
Sbjct: 491 EDETVIPGNVKISNLEEKIGLSFDD 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,958
Number of Sequences: 28952
Number of extensions: 349049
Number of successful extensions: 1082
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)