Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0809.Seq
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.9  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   2.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.4  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   5.8  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   5.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 463 LSFIYHCRDMKTYKTNFFCILKFY 392
           L   Y CR    + T+F+C    Y
Sbjct: 296 LCIYYFCRAFIIFPTHFYCAFSLY 319


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 187 IQNFHPIRNYISCILG 234
           ++N    RNYI CILG
Sbjct: 34  LKNDRLTRNYIDCILG 49


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 454 IYHCRDMKTYKTNFFCILKFYTSHGFN 374
           +YH    K Y   +FC +  Y +   N
Sbjct: 321 VYHLEIEKYYNILYFCRIMVYLNSAIN 347


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 187 IQNFHPIRNYISCILG 234
           ++N    RNY+ C+LG
Sbjct: 34  LKNDRLTRNYLDCVLG 49


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 187 IQNFHPIRNYISCILG 234
           ++N    RNY+ C+LG
Sbjct: 34  LKNDRLTRNYLDCVLG 49


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 399 SFIHRMGSMLGHRPY*NFPLC 337
           + I  +G+ L +RP+ +FP C
Sbjct: 682 NLIIHVGTQLIYRPFSHFPRC 702


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +2

Query: 251 RLLEGNVVDYYNKDPPTSFIEFKDFWISWHSG 346
           +L E   + +  +     F+   D W+SW  G
Sbjct: 359 QLREEGWIHHLARHAVACFLTRGDLWLSWEEG 390


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,684
Number of Sequences: 336
Number of extensions: 4563
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)