Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0809.Seq
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.1  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    27   3.6  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.3  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   8.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   8.3  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.3  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 725 YFLYAVCPQGTNILFVVLRYFPGVRELKCIALAIYKGSFSYPPTIASIGNELLF 564
           YF+   C  G  +L V +  FP  R L  ++ +I  G+ ++  ++ +  N LLF
Sbjct: 162 YFIADFCYWGNILLLVYIWIFPESRRLFILSYSISYGTLAW--SVVAWRNSLLF 213


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +2

Query: 257 LEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQYGLCPNIEPMRCIKLQNAKK 415
           +EG + D  +K PP      ++ +++WH     Y   P++E       +  KK
Sbjct: 216 VEGELADPDDKLPPPGMPYNRNQYVAWHGASAVYHPQPSLEAQLPAAARKRKK 268


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 717 ICSMSPRHKHFVCCSKVFSRCQR 649
           IC  + R  HF C   V  RCQ+
Sbjct: 694 ICDPNDRFVHFECGHSVHERCQQ 716


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 595 VGGYENE-PLYIARAIHFNSLTPGKYLRTTNKMFVPW 702
           V GY+   P+Y     H+N    G +L  ++ +  P+
Sbjct: 325 VAGYQTSVPIYAKALYHYNPFQSGNFLSLSSLVIAPF 361


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 493  YWGSFNHPSNLSFIYHCRDMKTYKTNFFCILKFYT 389
            +W S     N S +Y  R +  Y ++ F   +FYT
Sbjct: 1002 FWTSLGFAINNSLLYFVRALLFYCSSIFISKEFYT 1036


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 99  QWNSILQYLP*FPVN*LALDIIKLVYSTSYL 7
           +WNS L++L   P   L +DI+++V   +YL
Sbjct: 173 EWNSHLRHLLNIPKCFLGVDIVEIVNFFNYL 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,003
Number of Sequences: 5004
Number of extensions: 70248
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)