Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0809.Seq
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    30   2.2  
08_02_1028 - 23752118-23752274,23753918-23754053,23754236-237551...    29   2.8  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    29   5.0  

>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 63  EIMGDIVELNSTEGQVLYRANSSAIRIRVSFPLSAEPHITFYSKFPPHQELYQLYIGDV 239
           +I+  +  +N    Q    ++ SAI     FPL    H   Y K P  +  Y++++GD+
Sbjct: 294 DIVSSVHYVNERYPQAGTSSSGSAIPPLTMFPLELASHKILYEKIPTGE--YKIFLGDI 350


>08_02_1028 -
           23752118-23752274,23753918-23754053,23754236-23755195,
           23755770-23756373
          Length = 618

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 726 IFSICSMSPRHKHFVCCSKVFSRCQRIKMYCS 631
           +FS  ++SPR +H+ C   + SR  +++  CS
Sbjct: 355 MFSKYAISPRAEHYACIVDILSRAGQLEKACS 386


>11_04_0364 -
           16791774-16792490,16792545-16793561,16793856-16793920,
           16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 523 KEIEGGELRWVKMTNNSSLPMDAIVGGYENEPLYIARAIHFNSLTPGKYLRTTNKMFVPW 702
           K++   EL  ++   N  LP  ++   Y+N P+Y+ R     SL P  Y+   N++   W
Sbjct: 361 KDVIESELWDLEQPRNEVLP--SLELSYKNMPIYLKRCFVAISLYPKDYIFDRNQVLQLW 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,505,173
Number of Sequences: 37544
Number of extensions: 394727
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)